Ezkurdia I - Search Results

1

The potential clinical impact of the release of two drafts of the human proteome.

Ezkurdia I, Calvo E, Del Pozo A, Vázquez J, Valencia A, Tress ML. Ezkurdia I, et al. Expert Rev Proteomics. 2015;12(6):579-93. doi: 10.1586/14789450.2015.1103186. Epub 2015 Oct 23. Expert Rev Proteomics. 2015. PMID: 26496066 Free PMC article.

2

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.

Ezkurdia I, Juan D, Rodriguez JM, Frankish A, Diekhans M, Harrow J, Vazquez J, Valencia A, Tress ML. Ezkurdia I, et al. Hum Mol Genet. 2014 Nov 15;23(22):5866-78. doi: 10.1093/hmg/ddu309. Epub 2014 Jun 16. Hum Mol Genet. 2014. PMID: 24939910 Free PMC article.

3

Analyzing the first drafts of the human proteome.

Ezkurdia I, Vázquez J, Valencia A, Tress M. Ezkurdia I, et al. J Proteome Res. 2014 Aug 1;13(8):3854-5. doi: 10.1021/pr500572z. Epub 2014 Jul 16. J Proteome Res. 2014. PMID: 25014353 Free PMC article.

4

Most highly expressed protein-coding genes have a single dominant isoform.

Ezkurdia I, Rodriguez JM, Carrillo-de Santa Pau E, Vázquez J, Valencia A, Tress ML. Ezkurdia I, et al. J Proteome Res. 2015 Apr 3;14(4):1880-7. doi: 10.1021/pr501286b. Epub 2015 Mar 11. J Proteome Res. 2015. PMID: 25732134 Free PMC article.

5

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.

Abascal F, Ezkurdia I, Rodriguez-Rivas J, Rodriguez JM, del Pozo A, Vázquez J, Valencia A, Tress ML. Abascal F, et al. Among authors: ezkurdia i. PLoS Comput Biol. 2015 Jun 10;11(6):e1004325. doi: 10.1371/journal.pcbi.1004325. eCollection 2015 Jun. PLoS Comput Biol. 2015. PMID: 26061177 Free PMC article.

6

Progress and challenges in predicting protein-protein interaction sites.

Ezkurdia I, Bartoli L, Fariselli P, Casadio R, Valencia A, Tress ML. Ezkurdia I, et al. Brief Bioinform. 2009 May;10(3):233-46. doi: 10.1093/bib/bbp021. Epub 2009 Apr 3. Brief Bioinform. 2009. PMID: 19346321

7

Protein structural domains: definition and prediction.

Ezkurdia I, Tress ML. Ezkurdia I, et al. Curr Protoc Protein Sci. 2011 Nov;Chapter 2:2.14.1-2.14.16. doi: 10.1002/0471140864.ps0214s66. Curr Protoc Protein Sci. 2011. PMID: 22045561

8

Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function.

Ezkurdia I, del Pozo A, Frankish A, Rodriguez JM, Harrow J, Ashman K, Valencia A, Tress ML. Ezkurdia I, et al. Mol Biol Evol. 2012 Sep;29(9):2265-83. doi: 10.1093/molbev/mss100. Epub 2012 Mar 22. Mol Biol Evol. 2012. PMID: 22446687 Free PMC article.

9

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

Frenkel-Morgenstern M, Lacroix V, Ezkurdia I, Levin Y, Gabashvili A, Prilusky J, Del Pozo A, Tress M, Johnson R, Guigo R, Valencia A. Frenkel-Morgenstern M, et al. Among authors: ezkurdia i. Genome Res. 2012 Jul;22(7):1231-42. doi: 10.1101/gr.130062.111. Epub 2012 May 15. Genome Res. 2012. PMID: 22588898 Free PMC article.

10

APPRIS: annotation of principal and alternative splice isoforms.

Rodriguez JM, Maietta P, Ezkurdia I, Pietrelli A, Wesselink JJ, Lopez G, Valencia A, Tress ML. Rodriguez JM, et al. Among authors: ezkurdia i. Nucleic Acids Res. 2013 Jan;41(Database issue):D110-7. doi: 10.1093/nar/gks1058. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161672 Free PMC article.

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