Mahadevan R - Search Results

1

Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Among authors: mahadevan r. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.

2

Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum.

Wiback SJ, Mahadevan R, Palsson BØ. Wiback SJ, et al. Among authors: mahadevan r. J Theor Biol. 2003 Oct 7;224(3):313-24. doi: 10.1016/s0022-5193(03)00168-1. J Theor Biol. 2003. PMID: 12941590

3

Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum.

Wiback SJ, Mahadevan R, Palsson BØ. Wiback SJ, et al. Among authors: mahadevan r. Biotechnol Bioeng. 2004 May 5;86(3):317-31. doi: 10.1002/bit.20011. Biotechnol Bioeng. 2004. PMID: 15083512

4

Properties of metabolic networks: structure versus function.

Mahadevan R, Palsson BO. Mahadevan R, et al. Biophys J. 2005 Jan;88(1):L07-9. doi: 10.1529/biophysj.104.055723. Epub 2004 Dec 1. Biophys J. 2005. PMID: 15574705 Free PMC article.

5

k-Cone analysis: determining all candidate values for kinetic parameters on a network scale.

Famili I, Mahadevan R, Palsson BO. Famili I, et al. Among authors: mahadevan r. Biophys J. 2005 Mar;88(3):1616-25. doi: 10.1529/biophysj.104.050385. Epub 2004 Dec 30. Biophys J. 2005. PMID: 15626710 Free PMC article.

6

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR. Mahadevan R, et al. Appl Environ Microbiol. 2006 Feb;72(2):1558-68. doi: 10.1128/AEM.72.2.1558-1568.2006. Appl Environ Microbiol. 2006. PMID: 16461711 Free PMC article.

7

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.

Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R. Oh YK, et al. Among authors: mahadevan r. J Biol Chem. 2007 Sep 28;282(39):28791-28799. doi: 10.1074/jbc.M703759200. Epub 2007 Jun 15. J Biol Chem. 2007. PMID: 17573341 Free article.

8

Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R. Sun J, et al. Among authors: mahadevan r. BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15. BMC Syst Biol. 2009. PMID: 19175927 Free PMC article.

9

In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.

Mahadevan R, Palsson BØ, Lovley DR. Mahadevan R, et al. Nat Rev Microbiol. 2011 Jan;9(1):39-50. doi: 10.1038/nrmicro2456. Epub 2010 Dec 6. Nat Rev Microbiol. 2011. PMID: 21132020 Review.

10

Economics of membrane occupancy and respiro-fermentation.

Zhuang K, Vemuri GN, Mahadevan R. Zhuang K, et al. Among authors: mahadevan r. Mol Syst Biol. 2011 Jun 21;7:500. doi: 10.1038/msb.2011.34. Mol Syst Biol. 2011. PMID: 21694717 Free PMC article.

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