Lio' P - Search Results

1

How computer science can help in understanding the 3D genome architecture.

Shavit Y, Merelli I, Milanesi L, Lio' P. Shavit Y, et al. Brief Bioinform. 2016 Sep;17(5):733-44. doi: 10.1093/bib/bbv085. Epub 2015 Oct 3. Brief Bioinform. 2016. PMID: 26433013

2

Hierarchical block matrices as efficient representations of chromosome topologies and their application for 3C data integration.

Shavit Y, Walker BJ, Lio' P. Shavit Y, et al. Bioinformatics. 2016 Apr 15;32(8):1121-9. doi: 10.1093/bioinformatics/btv736. Epub 2015 Dec 17. Bioinformatics. 2016. PMID: 26685310

3

Advantages of using graph databases to explore chromatin conformation capture experiments.

D'Agostino D, Liò P, Aldinucci M, Merelli I. D'Agostino D, et al. BMC Bioinformatics. 2021 Apr 26;22(Suppl 2):43. doi: 10.1186/s12859-020-03937-0. BMC Bioinformatics. 2021. PMID: 33902433 Free PMC article.

4

CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks.

Shavit Y, Lio' P. Shavit Y, et al. Bioinformatics. 2013 May 1;29(9):1206-7. doi: 10.1093/bioinformatics/btt120. Epub 2013 Mar 18. Bioinformatics. 2013. PMID: 23508968

5

Systems medicine of inflammaging.

Castellani GC, Menichetti G, Garagnani P, Giulia Bacalini M, Pirazzini C, Franceschi C, Collino S, Sala C, Remondini D, Giampieri E, Mosca E, Bersanelli M, Vitali S, Valle IF, Liò P, Milanesi L. Castellani GC, et al. Brief Bioinform. 2016 May;17(3):527-40. doi: 10.1093/bib/bbv062. Epub 2015 Aug 24. Brief Bioinform. 2016. PMID: 26307062 Free PMC article.

6

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

Merelli I, Tordini F, Drocco M, Aldinucci M, Liò P, Milanesi L. Merelli I, et al. Front Genet. 2015 Feb 11;6:40. doi: 10.3389/fgene.2015.00040. eCollection 2015. Front Genet. 2015. PMID: 25717338 Free PMC article.

7

The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer.

Tordini F, Aldinucci M, Milanesi L, Liò P, Merelli I. Tordini F, et al. Front Genet. 2016 Nov 15;7:194. doi: 10.3389/fgene.2016.00194. eCollection 2016. Front Genet. 2016. PMID: 27895661 Free PMC article.

8

Combining a wavelet change point and the Bayes factor for analysing chromosomal interaction data.

Shavit Y, Lio' P. Shavit Y, et al. Mol Biosyst. 2014 Jun;10(6):1576-85. doi: 10.1039/c4mb00142g. Epub 2014 Apr 7. Mol Biosyst. 2014. PMID: 24710657

9

FisHiCal: an R package for iterative FISH-based calibration of Hi-C data.

Shavit Y, Hamey FK, Lio P. Shavit Y, et al. Bioinformatics. 2014 Nov 1;30(21):3120-2. doi: 10.1093/bioinformatics/btu491. Epub 2014 Jul 23. Bioinformatics. 2014. PMID: 25061071 Free PMC article.

10

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

Merelli I, Liò P, Milanesi L. Merelli I, et al. PLoS One. 2013 Sep 19;8(9):e75146. doi: 10.1371/journal.pone.0075146. eCollection 2013. PLoS One. 2013. PMID: 24069388 Free PMC article.

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