Pardo L - Search Results

1

TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins.

Perea M, Lugtenburg I, Mayol E, Cordomí A, Deupí X, Pardo L, Olivella M. Perea M, et al. Among authors: pardo l. BMC Bioinformatics. 2015 Aug 20;16(1):266. doi: 10.1186/s12859-015-0699-5. BMC Bioinformatics. 2015. PMID: 26289158 Free PMC article.

2

Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation.

Ballesteros JA, Deupi X, Olivella M, Haaksma EE, Pardo L. Ballesteros JA, et al. Among authors: pardo l. Biophys J. 2000 Nov;79(5):2754-60. doi: 10.1016/S0006-3495(00)76514-3. Biophys J. 2000. PMID: 11053148 Free PMC article.

3

The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation.

Govaerts C, Blanpain C, Deupi X, Ballet S, Ballesteros JA, Wodak SJ, Vassart G, Pardo L, Parmentier M. Govaerts C, et al. Among authors: pardo l. J Biol Chem. 2001 Apr 20;276(16):13217-25. doi: 10.1074/jbc.M011670200. Epub 2001 Jan 25. J Biol Chem. 2001. PMID: 11278962 Free article.

4

Computational model of the complex between GR113808 and the 5-HT4 receptor guided by site-directed mutagenesis and the crystal structure of rhodopsin.

López-Rodríguez ML, Murcia M, Benhamú B, Olivella M, Campillo M, Pardo L. López-Rodríguez ML, et al. Among authors: pardo l. J Comput Aided Mol Des. 2001 Nov;15(11):1025-33. doi: 10.1023/a:1014895611874. J Comput Aided Mol Des. 2001. PMID: 11989623

5

Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.

Olivella M, Deupi X, Govaerts C, Pardo L. Olivella M, et al. Among authors: pardo l. Biophys J. 2002 Jun;82(6):3207-13. doi: 10.1016/S0006-3495(02)75663-4. Biophys J. 2002. PMID: 12023245 Free PMC article.

6

Design, synthesis and pharmacological evaluation of 5-hydroxytryptamine(1a) receptor ligands to explore the three-dimensional structure of the receptor.

López-Rodríguez ML, Vicente B, Deupi X, Barrondo S, Olivella M, Morcillo MJ, Behamú B, Ballesteros JA, Sallés J, Pardo L. López-Rodríguez ML, et al. Among authors: pardo l. Mol Pharmacol. 2002 Jul;62(1):15-21. doi: 10.1124/mol.62.1.15. Mol Pharmacol. 2002. PMID: 12065750

7

Activation of CCR5 by chemokines involves an aromatic cluster between transmembrane helices 2 and 3.

Govaerts C, Bondue A, Springael JY, Olivella M, Deupi X, Le Poul E, Wodak SJ, Parmentier M, Pardo L, Blanpain C. Govaerts C, et al. Among authors: pardo l. J Biol Chem. 2003 Jan 17;278(3):1892-903. doi: 10.1074/jbc.M205685200. Epub 2002 Oct 30. J Biol Chem. 2003. PMID: 12411445 Free article.

8

Design and synthesis of S-(-)-2-[[4-(napht-1-yl)piperazin-1-yl]methyl]-1,4-dioxoperhydropyrrolo[1,2-a]pyrazine (CSP-2503) using computational simulation. A 5-HT1A receptor agonist.

López-Rodríguez ML, Morcillo MJ, Fernández E, Benhamú B, Tejada I, Ayala D, Viso A, Olivella M, Pardo L, Delgado M, Manzanares J, Fuentes JA. López-Rodríguez ML, et al. Among authors: pardo l. Bioorg Med Chem Lett. 2003 Apr 17;13(8):1429-32. doi: 10.1016/s0960-894x(03)00160-4. Bioorg Med Chem Lett. 2003. PMID: 12668005

9

Optimization of the pharmacophore model for 5-HT7R antagonism. Design and synthesis of new naphtholactam and naphthosultam derivatives.

López-Rodríguez ML, Porras E, Morcillo MJ, Benhamú B, Soto LJ, Lavandera JL, Ramos JA, Olivella M, Campillo M, Pardo L. López-Rodríguez ML, et al. Among authors: pardo l. J Med Chem. 2003 Dec 18;46(26):5638-50. doi: 10.1021/jm030841r. J Med Chem. 2003. PMID: 14667218

10

Ser and Thr residues modulate the conformation of pro-kinked transmembrane alpha-helices.

Deupi X, Olivella M, Govaerts C, Ballesteros JA, Campillo M, Pardo L. Deupi X, et al. Among authors: pardo l. Biophys J. 2004 Jan;86(1 Pt 1):105-15. doi: 10.1016/S0006-3495(04)74088-6. Biophys J. 2004. PMID: 14695254 Free PMC article.

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