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The species translation challenge-a systems biology perspective on human and rat bronchial epithelial cells.
Poussin C, Mathis C, Alexopoulos LG, Messinis DE, Dulize RH, Belcastro V, Melas IN, Sakellaropoulos T, Rhrissorrakrai K, Bilal E, Meyer P, Talikka M, Boué S, Norel R, Rice JJ, Stolovitzky G, Ivanov NV, Peitsch MC, Hoeng J. Poussin C, et al. Among authors: talikka m. Sci Data. 2014 Jun 10;1:140009. doi: 10.1038/sdata.2014.9. eCollection 2014. Sci Data. 2014. PMID: 25977767 Free PMC article.
Construction of a computable cell proliferation network focused on non-diseased lung cells.
Westra JW, Schlage WK, Frushour BP, Gebel S, Catlett NL, Han W, Eddy SF, Hengstermann A, Matthews AL, Mathis C, Lichtner RB, Poussin C, Talikka M, Veljkovic E, Van Hooser AA, Wong B, Maria MJ, Peitsch MC, Deehan R, Hoeng J. Westra JW, et al. Among authors: talikka m. BMC Syst Biol. 2011 Jul 2;5:105. doi: 10.1186/1752-0509-5-105. BMC Syst Biol. 2011. PMID: 21722388 Free PMC article.
A modular cell-type focused inflammatory process network model for non-diseased pulmonary tissue.
Westra JW, Schlage WK, Hengstermann A, Gebel S, Mathis C, Thomson T, Wong B, Hoang V, Veljkovic E, Peck M, Lichtner RB, Weisensee D, Talikka M, Deehan R, Hoeng J, Peitsch MC. Westra JW, et al. Among authors: talikka m. Bioinform Biol Insights. 2013 Jun 20;7:167-92. doi: 10.4137/BBI.S11509. Print 2013. Bioinform Biol Insights. 2013. PMID: 23843693 Free PMC article.
Case study: the role of mechanistic network models in systems toxicology.
Hoeng J, Talikka M, Martin F, Sewer A, Yang X, Iskandar A, Schlage WK, Peitsch MC. Hoeng J, et al. Among authors: talikka m. Drug Discov Today. 2014 Feb;19(2):183-92. doi: 10.1016/j.drudis.2013.07.023. Epub 2013 Aug 9. Drug Discov Today. 2014. PMID: 23933191 Review.
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.
Tarca AL, Lauria M, Unger M, Bilal E, Boue S, Kumar Dey K, Hoeng J, Koeppl H, Martin F, Meyer P, Nandy P, Norel R, Peitsch M, Rice JJ, Romero R, Stolovitzky G, Talikka M, Xiang Y, Zechner C; IMPROVER DSC Collaborators. Tarca AL, et al. Among authors: talikka m. Bioinformatics. 2013 Nov 15;29(22):2892-9. doi: 10.1093/bioinformatics/btt492. Epub 2013 Aug 20. Bioinformatics. 2013. PMID: 23966112 Free PMC article.
On Crowd-verification of Biological Networks.
sbv IMPROVER project team (in alphabetical order); Ansari S, Binder J, Boue S, Di Fabio A, Hayes W, Hoeng J, Iskandar A, Kleiman R, Norel R, O'Neel B, Peitsch MC, Poussin C, Pratt D, Rhrissorrakrai K, Schlage WK, Stolovitzky G, Talikka M. sbv IMPROVER project team (in alphabetical order), et al. Among authors: talikka m. Bioinform Biol Insights. 2013 Oct 10;7:307-25. doi: 10.4137/BBI.S12932. eCollection 2013. Bioinform Biol Insights. 2013. PMID: 24151423 Free PMC article.
53 results