Gerstein MB - Search Results

1

Loregic: a method to characterize the cooperative logic of regulatory factors.

Wang D, Yan KK, Sisu C, Cheng C, Rozowsky J, Meyerson W, Gerstein MB. Wang D, et al. Among authors: gerstein mb. PLoS Comput Biol. 2015 Apr 17;11(4):e1004132. doi: 10.1371/journal.pcbi.1004132. eCollection 2015 Apr. PLoS Comput Biol. 2015. PMID: 25884877 Free PMC article.

2

Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements.

Zhang Z, Gerstein M. Zhang Z, et al. J Biol. 2003;2(2):11. doi: 10.1186/1475-4924-2-11. Epub 2003 Jun 6. J Biol. 2003. PMID: 12814519 Free PMC article. Review.

3

Genomic analysis of gene expression relationships in transcriptional regulatory networks.

Yu H, Luscombe NM, Qian J, Gerstein M. Yu H, et al. Trends Genet. 2003 Aug;19(8):422-7. doi: 10.1016/S0168-9525(03)00175-6. Trends Genet. 2003. PMID: 12902159

4

Major molecular differences between mammalian sexes are involved in drug metabolism and renal function.

Rinn JL, Rozowsky JS, Laurenzi IJ, Petersen PH, Zou K, Zhong W, Gerstein M, Snyder M. Rinn JL, et al. Dev Cell. 2004 Jun;6(6):791-800. doi: 10.1016/j.devcel.2004.05.005. Dev Cell. 2004. PMID: 15177028 Free article.

5

Genomic analysis of regulatory network dynamics reveals large topological changes.

Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Luscombe NM, et al. Nature. 2004 Sep 16;431(7006):308-12. doi: 10.1038/nature02782. Nature. 2004. PMID: 15372033 Free article.

6

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Bertone P, et al. Science. 2004 Dec 24;306(5705):2242-6. doi: 10.1126/science.1103388. Epub 2004 Nov 11. Science. 2004. PMID: 15539566

7

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

8

Design optimization methods for genomic DNA tiling arrays.

Bertone P, Trifonov V, Rozowsky JS, Schubert F, Emanuelsson O, Karro J, Kao MY, Snyder M, Gerstein M. Bertone P, et al. Genome Res. 2006 Feb;16(2):271-81. doi: 10.1101/gr.4452906. Epub 2005 Dec 19. Genome Res. 2006. PMID: 16365382 Free PMC article.

9

Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.

Royce TE, Rozowsky JS, Luscombe NM, Emanuelsson O, Yu H, Zhu X, Snyder M, Gerstein MB. Royce TE, et al. Among authors: gerstein mb. Methods Enzymol. 2006;411:282-311. doi: 10.1016/S0076-6879(06)11015-0. Methods Enzymol. 2006. PMID: 16939796 Review.

10

Genomic analysis of the hierarchical structure of regulatory networks.

Yu H, Gerstein M. Yu H, et al. Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14724-31. doi: 10.1073/pnas.0508637103. Epub 2006 Sep 26. Proc Natl Acad Sci U S A. 2006. PMID: 17003135 Free PMC article.

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