Medvedev P - Search Results

1

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.

Fungtammasan A, Ananda G, Hile SE, Su MS, Sun C, Harris R, Medvedev P, Eckert K, Makova KD. Fungtammasan A, et al. Among authors: medvedev p. Genome Res. 2015 May;25(5):736-49. doi: 10.1101/gr.185892.114. Epub 2015 Mar 30. Genome Res. 2015. PMID: 25823460 Free PMC article.

2

Detecting copy number variation with mated short reads.

Medvedev P, Fiume M, Dzamba M, Smith T, Brudno M. Medvedev P, et al. Genome Res. 2010 Nov;20(11):1613-22. doi: 10.1101/gr.106344.110. Epub 2010 Aug 30. Genome Res. 2010. PMID: 20805290 Free PMC article.

3

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Among authors: medvedev p. Genome Res. 2016 Apr;26(4):530-40. doi: 10.1101/gr.199448.115. Epub 2016 Mar 2. Genome Res. 2016. PMID: 26934921 Free PMC article.

4

Compacting de Bruijn graphs from sequencing data quickly and in low memory.

Chikhi R, Limasset A, Medvedev P. Chikhi R, et al. Among authors: medvedev p. Bioinformatics. 2016 Jun 15;32(12):i201-i208. doi: 10.1093/bioinformatics/btw279. Bioinformatics. 2016. PMID: 27307618 Free PMC article.

5

VarMatch: robust matching of small variant datasets using flexible scoring schemes.

Sun C, Medvedev P. Sun C, et al. Among authors: medvedev p. Bioinformatics. 2017 May 1;33(9):1301-1308. doi: 10.1093/bioinformatics/btw797. Bioinformatics. 2017. PMID: 28011786

6

Y and W Chromosome Assemblies: Approaches and Discoveries.

Tomaszkiewicz M, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Among authors: medvedev p. Trends Genet. 2017 Apr;33(4):266-282. doi: 10.1016/j.tig.2017.01.008. Epub 2017 Feb 22. Trends Genet. 2017. PMID: 28236503 Review.

7

RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.

Rangavittal S, Harris RS, Cechova M, Tomaszkiewicz M, Chikhi R, Makova KD, Medvedev P. Rangavittal S, et al. Among authors: medvedev p. Bioinformatics. 2018 Apr 1;34(7):1125-1131. doi: 10.1093/bioinformatics/btx771. Bioinformatics. 2018. PMID: 29194476 Free PMC article.

8

AllSome Sequence Bloom Trees.

Sun C, Harris RS, Chikhi R, Medvedev P. Sun C, et al. Among authors: medvedev p. J Comput Biol. 2018 May;25(5):467-479. doi: 10.1089/cmb.2017.0258. Epub 2018 Apr 5. J Comput Biol. 2018. PMID: 29620920

9

Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

Sun C, Medvedev P. Sun C, et al. Among authors: medvedev p. Bioinformatics. 2019 Feb 1;35(3):415-420. doi: 10.1093/bioinformatics/bty641. Bioinformatics. 2019. PMID: 30032192

10

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon.

Sahlin K, Tomaszkiewicz M, Makova KD, Medvedev P. Sahlin K, et al. Among authors: medvedev p. Nat Commun. 2018 Nov 2;9(1):4601. doi: 10.1038/s41467-018-06910-x. Nat Commun. 2018. PMID: 30389934 Free PMC article.

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