Ji B - Search Results

1

Logical transformation of genome-scale metabolic models for gene level applications and analysis.

Zhang C, Ji B, Mardinoglu A, Nielsen J, Hua Q. Zhang C, et al. Among authors: ji b. Bioinformatics. 2015 Jul 15;31(14):2324-31. doi: 10.1093/bioinformatics/btv134. Epub 2015 Mar 2. Bioinformatics. 2015. PMID: 25735769

2

From next-generation sequencing to systematic modeling of the gut microbiome.

Ji B, Nielsen J. Ji B, et al. Front Genet. 2015 Jun 23;6:219. doi: 10.3389/fgene.2015.00219. eCollection 2015. Front Genet. 2015. PMID: 26157455 Free PMC article. Review.

3

Human gut microbiota and healthy aging: Recent developments and future prospective.

Kumar M, Babaei P, Ji B, Nielsen J. Kumar M, et al. Among authors: ji b. Nutr Healthy Aging. 2016 Oct 27;4(1):3-16. doi: 10.3233/NHA-150002. Nutr Healthy Aging. 2016. PMID: 28035338 Free PMC article. Review.

4

Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.

Nielsen JC, Grijseels S, Prigent S, Ji B, Dainat J, Nielsen KF, Frisvad JC, Workman M, Nielsen J. Nielsen JC, et al. Among authors: ji b. Nat Microbiol. 2017 Apr 3;2:17044. doi: 10.1038/nmicrobiol.2017.44. Nat Microbiol. 2017. PMID: 28368369

5

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis.

Das P, Ji B, Kovatcheva-Datchary P, Bäckhed F, Nielsen J. Das P, et al. Among authors: ji b. PLoS One. 2018 Mar 30;13(3):e0195161. doi: 10.1371/journal.pone.0195161. eCollection 2018. PLoS One. 2018. PMID: 29601608 Free PMC article.

6

Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling.

Kumar M, Ji B, Babaei P, Das P, Lappa D, Ramakrishnan G, Fox TE, Haque R, Petri WA, Bäckhed F, Nielsen J. Kumar M, et al. Among authors: ji b. Metab Eng. 2018 Sep;49:128-142. doi: 10.1016/j.ymben.2018.07.018. Epub 2018 Jul 31. Metab Eng. 2018. PMID: 30075203 Free PMC article.

7

Challenges in modeling the human gut microbiome.

Babaei P, Shoaie S, Ji B, Nielsen J. Babaei P, et al. Among authors: ji b. Nat Biotechnol. 2018 Aug 6;36(8):682-686. doi: 10.1038/nbt.4213. Nat Biotechnol. 2018. PMID: 30080831 No abstract available.

8

Identification of genes involved in shea butter biosynthesis from Vitellaria paradoxa fruits through transcriptomics and functional heterologous expression.

Wei Y, Ji B, Siewers V, Xu D, Halkier BA, Nielsen J. Wei Y, et al. Among authors: ji b. Appl Microbiol Biotechnol. 2019 May;103(9):3727-3736. doi: 10.1007/s00253-019-09720-3. Epub 2019 Mar 26. Appl Microbiol Biotechnol. 2019. PMID: 30915502 Free PMC article.

9

Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi.

Nielsen JC, Prigent S, Grijseels S, Workman M, Ji B, Nielsen J. Nielsen JC, et al. Among authors: ji b. mSystems. 2019 Apr 16;4(2):e00012-19. doi: 10.1128/mSystems.00012-19. eCollection 2019 Mar-Apr. mSystems. 2019. PMID: 31020039 Free PMC article.

10

Metagenomic analysis of bile salt biotransformation in the human gut microbiome.

Das P, Marcišauskas S, Ji B, Nielsen J. Das P, et al. Among authors: ji b. BMC Genomics. 2019 Jun 25;20(1):517. doi: 10.1186/s12864-019-5899-3. BMC Genomics. 2019. PMID: 31234773 Free PMC article.

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