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Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: gentleman r. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Bioconductor: open software development for computational biology and bioinformatics.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Gentleman RC, et al. Genome Biol. 2004;5(10):R80. doi: 10.1186/gb-2004-5-10-r80. Epub 2004 Sep 15. Genome Biol. 2004. PMID: 15461798 Free PMC article.
Network structures and algorithms in Bioconductor.
Carey VJ, Gentry J, Whalen E, Gentleman R. Carey VJ, et al. Among authors: gentleman r. Bioinformatics. 2005 Jan 1;21(1):135-6. doi: 10.1093/bioinformatics/bth458. Epub 2004 Aug 5. Bioinformatics. 2005. PMID: 15297301
GGtools: analysis of genetics of gene expression in bioconductor.
Carey VJ, Morgan M, Falcon S, Lazarus R, Gentleman R. Carey VJ, et al. Among authors: gentleman r. Bioinformatics. 2007 Feb 15;23(4):522-3. doi: 10.1093/bioinformatics/btl628. Epub 2006 Dec 8. Bioinformatics. 2007. PMID: 17158513 Review.
Graphs in molecular biology.
Huber W, Carey VJ, Long L, Falcon S, Gentleman R. Huber W, et al. Among authors: gentleman r. BMC Bioinformatics. 2007 Sep 27;8 Suppl 6(Suppl 6):S8. doi: 10.1186/1471-2105-8-S6-S8. BMC Bioinformatics. 2007. PMID: 17903289 Free PMC article. Review.
84 results