Scialdone A - Search Results

1

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Buettner F, et al. Among authors: scialdone a. Nat Biotechnol. 2015 Feb;33(2):155-60. doi: 10.1038/nbt.3102. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599176

2

Single Cell Genomics meeting in Stockholm: from single cells to cell types.

Scialdone A, Achim K, Marioni JC. Scialdone A, et al. Genome Biol. 2014 Oct 18;15(10):496. doi: 10.1186/s13059-014-0496-x. Genome Biol. 2014. PMID: 25418892 Free PMC article.

3

Computational assignment of cell-cycle stage from single-cell transcriptome data.

Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F. Scialdone A, et al. Methods. 2015 Sep 1;85:54-61. doi: 10.1016/j.ymeth.2015.06.021. Epub 2015 Jul 2. Methods. 2015. PMID: 26142758 Free article.

4

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq.

Saraiva LR, Ibarra-Soria X, Khan M, Omura M, Scialdone A, Mombaerts P, Marioni JC, Logan DW. Saraiva LR, et al. Among authors: scialdone a. Sci Rep. 2015 Dec 16;5:18178. doi: 10.1038/srep18178. Sci Rep. 2015. PMID: 26670777 Free PMC article.

5

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos.

Goolam M, Scialdone A, Graham SJL, Macaulay IC, Jedrusik A, Hupalowska A, Voet T, Marioni JC, Zernicka-Goetz M. Goolam M, et al. Among authors: scialdone a. Cell. 2016 Mar 24;165(1):61-74. doi: 10.1016/j.cell.2016.01.047. Cell. 2016. PMID: 27015307 Free PMC article.

6

Resolving early mesoderm diversification through single-cell expression profiling.

Scialdone A, Tanaka Y, Jawaid W, Moignard V, Wilson NK, Macaulay IC, Marioni JC, Göttgens B. Scialdone A, et al. Nature. 2016 Jul 14;535(7611):289-293. doi: 10.1038/nature18633. Epub 2016 Jul 6. Nature. 2016. PMID: 27383781 Free PMC article.

7

Complex multi-enhancer contacts captured by genome architecture mapping.

Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A. Beagrie RA, et al. Among authors: scialdone a. Nature. 2017 Mar 23;543(7646):519-524. doi: 10.1038/nature21411. Epub 2017 Mar 8. Nature. 2017. PMID: 28273065 Free PMC article.

8

Normalizing single-cell RNA sequencing data: challenges and opportunities.

Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC. Vallejos CA, et al. Among authors: scialdone a. Nat Methods. 2017 Jun;14(6):565-571. doi: 10.1038/nmeth.4292. Epub 2017 May 15. Nat Methods. 2017. PMID: 28504683 Free PMC article.

9

Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation.

Mohammed H, Hernando-Herraez I, Savino A, Scialdone A, Macaulay I, Mulas C, Chandra T, Voet T, Dean W, Nichols J, Marioni JC, Reik W. Mohammed H, et al. Among authors: scialdone a. Cell Rep. 2017 Aug 1;20(5):1215-1228. doi: 10.1016/j.celrep.2017.07.009. Cell Rep. 2017. PMID: 28768204 Free PMC article.

10

Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data.

Griffiths JA, Scialdone A, Marioni JC. Griffiths JA, et al. Among authors: scialdone a. BMC Genomics. 2017 Nov 25;18(1):904. doi: 10.1186/s12864-017-4253-x. BMC Genomics. 2017. PMID: 29178830 Free PMC article.

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