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RELAX: detecting relaxed selection in a phylogenetic framework.
Wertheim JO, Murrell B, Smith MD, Kosakovsky Pond SL, Scheffler K. Wertheim JO, et al. Among authors: scheffler k. Mol Biol Evol. 2015 Mar;32(3):820-32. doi: 10.1093/molbev/msu400. Epub 2014 Dec 23. Mol Biol Evol. 2015. PMID: 25540451 Free PMC article.
FUBAR: a fast, unconstrained bayesian approximation for inferring selection.
Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K. Murrell B, et al. Among authors: scheffler k. Mol Biol Evol. 2013 May;30(5):1196-205. doi: 10.1093/molbev/mst030. Epub 2013 Feb 18. Mol Biol Evol. 2013. PMID: 23420840 Free PMC article.
Evolutionary origins of human herpes simplex viruses 1 and 2.
Wertheim JO, Smith MD, Smith DM, Scheffler K, Kosakovsky Pond SL. Wertheim JO, et al. Among authors: scheffler k. Mol Biol Evol. 2014 Sep;31(9):2356-64. doi: 10.1093/molbev/msu185. Epub 2014 Jun 10. Mol Biol Evol. 2014. PMID: 24916030 Free PMC article.
Gene-wide identification of episodic selection.
Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: scheffler k. Mol Biol Evol. 2015 May;32(5):1365-71. doi: 10.1093/molbev/msv035. Epub 2015 Feb 19. Mol Biol Evol. 2015. PMID: 25701167 Free PMC article.
Benchmarking multi-rate codon models.
Delport W, Scheffler K, Gravenor MB, Muse SV, Kosakovsky Pond S. Delport W, et al. Among authors: scheffler k. PLoS One. 2010 Jul 21;5(7):e11587. doi: 10.1371/journal.pone.0011587. PLoS One. 2010. PMID: 20657773 Free PMC article.
Modeling HIV-1 drug resistance as episodic directional selection.
Murrell B, de Oliveira T, Seebregts C, Kosakovsky Pond SL, Scheffler K; Southern African Treatment and Resistance Network-SATuRN Consortium. Murrell B, et al. Among authors: scheffler k. PLoS Comput Biol. 2012;8(5):e1002507. doi: 10.1371/journal.pcbi.1002507. Epub 2012 May 10. PLoS Comput Biol. 2012. PMID: 22589711 Free PMC article.
539 results