Stadler T - Search Results

1

Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.

Popinga A, Vaughan T, Stadler T, Drummond AJ. Popinga A, et al. Among authors: stadler t. Genetics. 2015 Feb;199(2):595-607. doi: 10.1534/genetics.114.172791. Epub 2014 Dec 19. Genetics. 2015. PMID: 25527289 Free PMC article.

2

Inferring epidemiological parameters on the basis of allele frequencies.

Stadler T. Stadler T. Genetics. 2011 Jul;188(3):663-72. doi: 10.1534/genetics.111.126466. Epub 2011 May 5. Genetics. 2011. PMID: 21546541 Free PMC article.

3

Estimating the basic reproductive number from viral sequence data.

Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Joos B, Rieder P, Xie D, Günthard HF, Drummond AJ, Bonhoeffer S; Swiss HIV Cohort Study. Stadler T, et al. Mol Biol Evol. 2012 Jan;29(1):347-57. doi: 10.1093/molbev/msr217. Epub 2011 Sep 2. Mol Biol Evol. 2012. PMID: 21890480

4

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV).

Stadler T, Kühnert D, Bonhoeffer S, Drummond AJ. Stadler T, et al. Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):228-33. doi: 10.1073/pnas.1207965110. Epub 2012 Dec 17. Proc Natl Acad Sci U S A. 2013. PMID: 23248286 Free PMC article.

5

Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission.

Leventhal GE, Günthard HF, Bonhoeffer S, Stadler T. Leventhal GE, et al. Among authors: stadler t. Mol Biol Evol. 2014 Jan;31(1):6-17. doi: 10.1093/molbev/mst172. Epub 2013 Oct 1. Mol Biol Evol. 2014. PMID: 24085839 Free PMC article.

6

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ. Kühnert D, et al. Among authors: stadler t. J R Soc Interface. 2014 Feb 26;11(94):20131106. doi: 10.1098/rsif.2013.1106. Print 2014 May 6. J R Soc Interface. 2014. PMID: 24573331 Free PMC article.

7

Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models.

Boskova V, Bonhoeffer S, Stadler T. Boskova V, et al. Among authors: stadler t. PLoS Comput Biol. 2014 Nov 6;10(11):e1003913. doi: 10.1371/journal.pcbi.1003913. eCollection 2014 Nov. PLoS Comput Biol. 2014. PMID: 25375100 Free PMC article.

8

Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration.

Gavryushkina A, Welch D, Stadler T, Drummond AJ. Gavryushkina A, et al. Among authors: stadler t. PLoS Comput Biol. 2014 Dec 4;10(12):e1003919. doi: 10.1371/journal.pcbi.1003919. eCollection 2014 Dec. PLoS Comput Biol. 2014. PMID: 25474353 Free PMC article.

9

How well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?

Stadler T, Vaughan TG, Gavryushkin A, Guindon S, Kühnert D, Leventhal GE, Drummond AJ. Stadler T, et al. Proc Biol Sci. 2015 May 7;282(1806):20150420. doi: 10.1098/rspb.2015.0420. Proc Biol Sci. 2015. PMID: 25876846 Free PMC article.

10

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ. Kühnert D, et al. Among authors: stadler t. Mol Biol Evol. 2016 Aug;33(8):2102-16. doi: 10.1093/molbev/msw064. Epub 2016 Apr 9. Mol Biol Evol. 2016. PMID: 27189573 Free PMC article.

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