Gerstein MB - Search Results

1

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.

Mu JC, Mohiyuddin M, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. Mu JC, et al. Among authors: gerstein mb. Bioinformatics. 2015 May 1;31(9):1469-71. doi: 10.1093/bioinformatics/btu828. Epub 2014 Dec 17. Bioinformatics. 2015. PMID: 25524895 Free PMC article.

2

Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts.

Greenbaum D, Jansen R, Gerstein M. Greenbaum D, et al. Bioinformatics. 2002 Apr;18(4):585-96. doi: 10.1093/bioinformatics/18.4.585. Bioinformatics. 2002. PMID: 12016056

3

Predicting interactions in protein networks by completing defective cliques.

Yu H, Paccanaro A, Trifonov V, Gerstein M. Yu H, et al. Bioinformatics. 2006 Apr 1;22(7):823-9. doi: 10.1093/bioinformatics/btl014. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455753

4

The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.

Yip KY, Yu H, Kim PM, Schultz M, Gerstein M. Yip KY, et al. Bioinformatics. 2006 Dec 1;22(23):2968-70. doi: 10.1093/bioinformatics/btl488. Epub 2006 Oct 4. Bioinformatics. 2006. PMID: 17021160

5

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M. Du J, et al. Bioinformatics. 2006 Dec 15;22(24):3016-24. doi: 10.1093/bioinformatics/btl515. Epub 2006 Oct 12. Bioinformatics. 2006. PMID: 17038339

6

Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins.

Burba AE, Lehnert U, Yu EZ, Gerstein M. Burba AE, et al. Bioinformatics. 2006 Nov 15;22(22):2735-8. doi: 10.1093/bioinformatics/btl274. Epub 2006 Oct 23. Bioinformatics. 2006. PMID: 17060355

7

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB. Royce TE, et al. Among authors: gerstein mb. Bioinformatics. 2007 Apr 15;23(8):988-97. doi: 10.1093/bioinformatics/btm052. Epub 2007 Mar 25. Bioinformatics. 2007. PMID: 17387113

8

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M. Zhang ZD, et al. Genome Biol. 2007;8(5):R81. doi: 10.1186/gb-2007-8-5-r81. Genome Biol. 2007. PMID: 17501994 Free PMC article.

9

Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications.

Yu H, Jansen R, Stolovitzky G, Gerstein M. Yu H, et al. Bioinformatics. 2007 Aug 15;23(16):2163-73. doi: 10.1093/bioinformatics/btm291. Epub 2007 May 31. Bioinformatics. 2007. PMID: 17540677

10

An integrated system for studying residue coevolution in proteins.

Yip KY, Patel P, Kim PM, Engelman DM, McDermott D, Gerstein M. Yip KY, et al. Bioinformatics. 2008 Jan 15;24(2):290-2. doi: 10.1093/bioinformatics/btm584. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056067

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