Madduri R - Search Results

1

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.

Trubetskoy V, Rodriguez A, Dave U, Campbell N, Crawford EL, Cook EH, Sutcliffe JS, Foster I, Madduri R, Cox NJ, Davis LK. Trubetskoy V, et al. Among authors: madduri r. Bioinformatics. 2015 Jan 15;31(2):187-93. doi: 10.1093/bioinformatics/btu591. Epub 2014 Sep 29. Bioinformatics. 2015. PMID: 25270638 Free PMC article.

2

A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid.

Tan W, Missier P, Foster I, Madduri R, Goble C. Tan W, et al. Among authors: madduri r. Concurr Comput. 2010 Jun 25;22(9):1098-1117. doi: 10.1002/cpe.1547. Concurr Comput. 2010. PMID: 20625534 Free PMC article.

3

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA. Tan W, et al. Among authors: madduri r. BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542. BMC Bioinformatics. 2010. PMID: 21044328 Free PMC article.

4

Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses.

Liu B, Madduri RK, Sotomayor B, Chard K, Lacinski L, Dave UJ, Li J, Liu C, Foster IT. Liu B, et al. J Biomed Inform. 2014 Jun;49:119-33. doi: 10.1016/j.jbi.2014.01.005. Epub 2014 Jan 22. J Biomed Inform. 2014. PMID: 24462600 Free PMC article.

5

Experiences Building Globus Genomics: A Next-Generation Sequencing Analysis Service using Galaxy, Globus, and Amazon Web Services.

Madduri RK, Sulakhe D, Lacinski L, Liu B, Rodriguez A, Chard K, Dave UJ, Foster IT. Madduri RK, et al. Concurr Comput. 2014 Sep 10;26(13):2266-2279. doi: 10.1002/cpe.3274. Concurr Comput. 2014. PMID: 25342933 Free PMC article.

6

Big biomedical data as the key resource for discovery science.

Toga AW, Foster I, Kesselman C, Madduri R, Chard K, Deutsch EW, Price ND, Glusman G, Heavner BD, Dinov ID, Ames J, Van Horn J, Kramer R, Hood L. Toga AW, et al. Among authors: madduri r. J Am Med Inform Assoc. 2015 Nov;22(6):1126-31. doi: 10.1093/jamia/ocv077. Epub 2015 Jul 21. J Am Med Inform Assoc. 2015. PMID: 26198305 Free PMC article.

7

A case study for cloud based high throughput analysis of NGS data using the globus genomics system.

Bhuvaneshwar K, Sulakhe D, Gauba R, Rodriguez A, Madduri R, Dave U, Lacinski L, Foster I, Gusev Y, Madhavan S. Bhuvaneshwar K, et al. Among authors: madduri r. Comput Struct Biotechnol J. 2014 Nov 7;13:64-74. doi: 10.1016/j.csbj.2014.11.001. eCollection 2015. Comput Struct Biotechnol J. 2014. PMID: 26925205 Free PMC article.

8

Models and Simulations as a Service: Exploring the Use of Galaxy for Delivering Computational Models.

Walker MA, Madduri R, Rodriguez A, Greenstein JL, Winslow RL. Walker MA, et al. Among authors: madduri r. Biophys J. 2016 Mar 8;110(5):1038-43. doi: 10.1016/j.bpj.2015.12.041. Biophys J. 2016. PMID: 26958881 Free PMC article.

9

LINE1 insertions as a genomic risk factor for schizophrenia: Preliminary evidence from an affected family.

Guffanti G, Gaudi S, Klengel T, Fallon JH, Mangalam H, Madduri R, Rodriguez A, DeCrescenzo P, Glovienka E, Sobell J, Klengel C, Pato M, Ressler KJ, Pato C, Macciardi F. Guffanti G, et al. Among authors: madduri r. Am J Med Genet B Neuropsychiatr Genet. 2016 Jun;171(4):534-45. doi: 10.1002/ajmg.b.32437. Epub 2016 Mar 16. Am J Med Genet B Neuropsychiatr Genet. 2016. PMID: 26990047

10

Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations.

Dinov ID, Heavner B, Tang M, Glusman G, Chard K, Darcy M, Madduri R, Pa J, Spino C, Kesselman C, Foster I, Deutsch EW, Price ND, Van Horn JD, Ames J, Clark K, Hood L, Hampstead BM, Dauer W, Toga AW. Dinov ID, et al. Among authors: madduri r. PLoS One. 2016 Aug 5;11(8):e0157077. doi: 10.1371/journal.pone.0157077. eCollection 2016. PLoS One. 2016. PMID: 27494614 Free PMC article.

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