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Page 1
Comparative analysis of the transcriptome across distant species.
Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R. Gerstein MB, et al. Among authors: graveley br. Nature. 2014 Aug 28;512(7515):445-8. doi: 10.1038/nature13424. Nature. 2014. PMID: 25164755 Free PMC article.
Splicing from the outside in.
Yang L, Park J, Graveley BR. Yang L, et al. Among authors: graveley br. Mol Cell. 2007 Sep 21;27(6):861-2. doi: 10.1016/j.molcel.2007.09.003. Mol Cell. 2007. PMID: 17889658 Free PMC article.
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex.
Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, Terns RM, Terns MP. Hale CR, et al. Among authors: graveley br. Cell. 2009 Nov 25;139(5):945-56. doi: 10.1016/j.cell.2009.07.040. Cell. 2009. PMID: 19945378 Free PMC article.
Regulatory divergence in Drosophila revealed by mRNA-seq.
McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, Wittkopp PJ. McManus CJ, et al. Among authors: graveley br. Genome Res. 2010 Jun;20(6):816-25. doi: 10.1101/gr.102491.109. Epub 2010 Mar 30. Genome Res. 2010. PMID: 20354124 Free PMC article.
Global analysis of trans-splicing in Drosophila.
McManus CJ, Duff MO, Eipper-Mains J, Graveley BR. McManus CJ, et al. Among authors: graveley br. Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12975-9. doi: 10.1073/pnas.1007586107. Epub 2010 Jul 1. Proc Natl Acad Sci U S A. 2010. PMID: 20615941 Free PMC article.
Conservation of an RNA regulatory map between Drosophila and mammals.
Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR. Brooks AN, et al. Among authors: graveley br. Genome Res. 2011 Feb;21(2):193-202. doi: 10.1101/gr.108662.110. Epub 2010 Oct 4. Genome Res. 2011. PMID: 20921232 Free PMC article.
Genome-wide analysis of promoter architecture in Drosophila melanogaster.
Hoskins RA, Landolin JM, Brown JB, Sandler JE, Takahashi H, Lassmann T, Yu C, Booth BW, Zhang D, Wan KH, Yang L, Boley N, Andrews J, Kaufman TC, Graveley BR, Bickel PJ, Carninci P, Carlson JW, Celniker SE. Hoskins RA, et al. Among authors: graveley br. Genome Res. 2011 Feb;21(2):182-92. doi: 10.1101/gr.112466.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177961 Free PMC article.
The transcriptional diversity of 25 Drosophila cell lines.
Cherbas L, Willingham A, Zhang D, Yang L, Zou Y, Eads BD, Carlson JW, Landolin JM, Kapranov P, Dumais J, Samsonova A, Choi JH, Roberts J, Davis CA, Tang H, van Baren MJ, Ghosh S, Dobin A, Bell K, Lin W, Langton L, Duff MO, Tenney AE, Zaleski C, Brent MR, Hoskins RA, Kaufman TC, Andrews J, Graveley BR, Perrimon N, Celniker SE, Gingeras TR, Cherbas P. Cherbas L, et al. Among authors: graveley br. Genome Res. 2011 Feb;21(2):301-14. doi: 10.1101/gr.112961.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177962 Free PMC article.
138 results