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Defining the estimated core genome of bacterial populations using a Bayesian decision model.
van Tonder AJ, Mistry S, Bray JE, Hill DM, Cody AJ, Farmer CL, Klugman KP, von Gottberg A, Bentley SD, Parkhill J, Jolley KA, Maiden MC, Brueggemann AB. van Tonder AJ, et al. Among authors: cody aj. PLoS Comput Biol. 2014 Aug 21;10(8):e1003788. doi: 10.1371/journal.pcbi.1003788. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25144616 Free PMC article.
Progressive genome-wide introgression in agricultural Campylobacter coli.
Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC, Falush D. Sheppard SK, et al. Mol Ecol. 2013 Feb;22(4):1051-64. doi: 10.1111/mec.12162. Epub 2012 Dec 20. Mol Ecol. 2013. PMID: 23279096 Free PMC article.
Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork.
Yahara K, Méric G, Taylor AJ, de Vries SP, Murray S, Pascoe B, Mageiros L, Torralbo A, Vidal A, Ridley A, Komukai S, Wimalarathna H, Cody AJ, Colles FM, McCarthy N, Harris D, Bray JE, Jolley KA, Maiden MC, Bentley SD, Parkhill J, Bayliss CD, Grant A, Maskell D, Didelot X, Kelly DJ, Sheppard SK. Yahara K, et al. Among authors: cody aj. Environ Microbiol. 2017 Jan;19(1):361-380. doi: 10.1111/1462-2920.13628. Environ Microbiol. 2017. PMID: 27883255 Free article.
Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.
Pascoe B, Méric G, Yahara K, Wimalarathna H, Murray S, Hitchings MD, Sproston EL, Carrillo CD, Taboada EN, Cooper KK, Huynh S, Cody AJ, Jolley KA, Maiden MCJ, McCarthy ND, Didelot X, Parker CT, Sheppard SK. Pascoe B, et al. Among authors: cody aj. Mol Ecol. 2017 Sep;26(17):4497-4508. doi: 10.1111/mec.14176. Epub 2017 Jun 19. Mol Ecol. 2017. PMID: 28493321 Free PMC article.
33 results