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High-coverage sequencing and annotated assemblies of the budgerigar genome.
Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, Wray G, Rasolonjatovo I, Winer R, Knight JR, Koren S, Warren WC, Zhang G, Phillippy AM, Jarvis ED. Ganapathy G, et al. Among authors: aboukhalil r. Gigascience. 2014 Jul 8;3:11. doi: 10.1186/2047-217X-3-11. eCollection 2014. Gigascience. 2014. PMID: 25061512 Free PMC article.
Ribbon: intuitive visualization for complex genomic variation.
Nattestad M, Aboukhalil R, Chin CS, Schatz MC. Nattestad M, et al. Among authors: aboukhalil r. Bioinformatics. 2021 Apr 20;37(3):413-415. doi: 10.1093/bioinformatics/btaa680. Bioinformatics. 2021. PMID: 32766814 Free PMC article.
Interactive analysis and assessment of single-cell copy-number variations.
Garvin T, Aboukhalil R, Kendall J, Baslan T, Atwal GS, Hicks J, Wigler M, Schatz MC. Garvin T, et al. Among authors: aboukhalil r. Nat Methods. 2015 Nov;12(11):1058-60. doi: 10.1038/nmeth.3578. Epub 2015 Sep 7. Nat Methods. 2015. PMID: 26344043 Free PMC article.
Utility of Single-Cell Genomics in Diagnostic Evaluation of Prostate Cancer.
Alexander J, Kendall J, McIndoo J, Rodgers L, Aboukhalil R, Levy D, Stepansky A, Sun G, Chobardjiev L, Riggs M, Cox H, Hakker I, Nowak DG, Laze J, Llukani E, Srivastava A, Gruschow S, Yadav SS, Robinson B, Atwal G, Trotman LC, Lepor H, Hicks J, Wigler M, Krasnitz A. Alexander J, et al. Among authors: aboukhalil r. Cancer Res. 2018 Jan 15;78(2):348-358. doi: 10.1158/0008-5472.CAN-17-1138. Epub 2017 Nov 27. Cancer Res. 2018. PMID: 29180472 Free PMC article.
New library construction method for single-cell genomes.
Xi L, Belyaev A, Spurgeon S, Wang X, Gong H, Aboukhalil R, Fekete R. Xi L, et al. Among authors: aboukhalil r. PLoS One. 2017 Jul 19;12(7):e0181163. doi: 10.1371/journal.pone.0181163. eCollection 2017. PLoS One. 2017. PMID: 28723968 Free PMC article.
41 results