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Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry.
Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, Bendall ML, Sczyrba A, Thompson J, Feldman T, Guenther JM, Gladden JM, Cheng JF, Adams PD, Rubin EM, Simmons BA, Sale KL, Northen TR, Deutsch S. Heins RA, et al. Among authors: rubin em. ACS Chem Biol. 2014 Sep 19;9(9):2082-91. doi: 10.1021/cb500244v. Epub 2014 Jul 17. ACS Chem Biol. 2014. PMID: 24984213 Free PMC article.
Convergent evolution in primates and an insectivore.
Boffelli D, Cheng JF, Rubin EM. Boffelli D, et al. Among authors: rubin em. Genomics. 2004 Jan;83(1):19-23. doi: 10.1016/s0888-7543(03)00148-4. Genomics. 2004. PMID: 14667805
Insights into the phylogeny and coding potential of microbial dark matter.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T. Rinke C, et al. Among authors: rubin em. Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14. Nature. 2013. PMID: 23851394 Free article.
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA. Wu D, et al. Among authors: rubin em. Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656. Nature. 2009. PMID: 20033048 Free PMC article.
CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.
Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, De Raad M, Silva L, Luhrs A, Lubbe A, Hoyt DW, Francavilla C, Otani H, Deutsch S, Washton NM, Rubin EM, Mouncey NJ, Visel A, Northen T, Cheng JF, Bode HB, Yoshikuni Y. Wang G, et al. Among authors: rubin em. Nat Microbiol. 2019 Dec;4(12):2498-2510. doi: 10.1038/s41564-019-0573-8. Epub 2019 Oct 14. Nat Microbiol. 2019. PMID: 31611640
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, Wang Z, Rubin EM. Hess M, et al. Among authors: rubin em. Science. 2011 Jan 28;331(6016):463-7. doi: 10.1126/science.1200387. Science. 2011. PMID: 21273488
257 results