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Importing MAGE-ML format microarray data into BioConductor.
Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B. Durinck S, et al. Bioinformatics. 2004 Dec 12;20(18):3641-2. doi: 10.1093/bioinformatics/bth396. Epub 2004 Jul 15. Bioinformatics. 2004. PMID: 15256416
Network structures and algorithms in Bioconductor.
Carey VJ, Gentry J, Whalen E, Gentleman R. Carey VJ, et al. Bioinformatics. 2005 Jan 1;21(1):135-6. doi: 10.1093/bioinformatics/bth458. Epub 2004 Aug 5. Bioinformatics. 2005. PMID: 15297301
rtracklayer: an R package for interfacing with genome browsers.
Lawrence M, Gentleman R, Carey V. Lawrence M, et al. Among authors: carey v. Bioinformatics. 2009 Jul 15;25(14):1841-2. doi: 10.1093/bioinformatics/btp328. Epub 2009 May 25. Bioinformatics. 2009. PMID: 19468054 Free PMC article.
Software for computing and annotating genomic ranges.
Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, Gentleman R, Morgan MT, Carey VJ. Lawrence M, et al. PLoS Comput Biol. 2013;9(8):e1003118. doi: 10.1371/journal.pcbi.1003118. Epub 2013 Aug 8. PLoS Comput Biol. 2013. PMID: 23950696 Free PMC article.
Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: carey vj. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
282 results