Kasprzak WK - Search Results

1

Genomic analyses reveal broad impact of miR-137 on genes associated with malignant transformation and neuronal differentiation in glioblastoma cells.

Tamim S, Vo DT, Uren PJ, Qiao M, Bindewald E, Kasprzak WK, Shapiro BA, Nakaya HI, Burns SC, Araujo PR, Nakano I, Radek AJ, Kuersten S, Smith AD, Penalva LO. Tamim S, et al. Among authors: kasprzak wk. PLoS One. 2014 Jan 22;9(1):e85591. doi: 10.1371/journal.pone.0085591. eCollection 2014. PLoS One. 2014. PMID: 24465609 Free PMC article.

2

STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

Shapiro BA, Kasprzak W. Shapiro BA, et al. J Mol Graph. 1996 Aug;14(4):194-205, 222-4. doi: 10.1016/s0263-7855(96)00063-x. J Mol Graph. 1996. PMID: 9076633

3

Stem Trace: an interactive visual tool for comparative RNA structure analysis.

Kasprzak W, Shapiro B. Kasprzak W, et al. Bioinformatics. 1999 Jan;15(1):16-31. doi: 10.1093/bioinformatics/15.1.16. Bioinformatics. 1999. PMID: 10068689

4

RNA folding pathway functional intermediates: their prediction and analysis.

Shapiro BA, Bengali D, Kasprzak W, Wu JC. Shapiro BA, et al. J Mol Biol. 2001 Sep 7;312(1):27-44. doi: 10.1006/jmbi.2001.4931. J Mol Biol. 2001. PMID: 11545583

5

Structural differentiation of the HIV-1 polyA signals.

Gee AH, Kasprzak W, Shapiro BA. Gee AH, et al. J Biomol Struct Dyn. 2006 Feb;23(4):417-28. doi: 10.1080/07391102.2006.10531236. J Biomol Struct Dyn. 2006. PMID: 16363877

6

Structural polymorphism of the HIV-1 leader region explored by computational methods.

Kasprzak W, Bindewald E, Shapiro BA. Kasprzak W, et al. Nucleic Acids Res. 2005 Dec 20;33(22):7151-63. doi: 10.1093/nar/gki1015. Print 2005. Nucleic Acids Res. 2005. PMID: 16371347 Free PMC article.

7

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.

Shapiro BA, Kasprzak W, Grunewald C, Aman J. Shapiro BA, et al. J Mol Graph Model. 2006 Dec;25(4):514-31. doi: 10.1016/j.jmgm.2006.04.004. Epub 2006 Apr 28. J Mol Graph Model. 2006. PMID: 16725358

8

Bridging the gap in RNA structure prediction.

Shapiro BA, Yingling YG, Kasprzak W, Bindewald E. Shapiro BA, et al. Curr Opin Struct Biol. 2007 Apr;17(2):157-65. doi: 10.1016/j.sbi.2007.03.001. Epub 2007 Mar 23. Curr Opin Struct Biol. 2007. PMID: 17383172 Review.

9

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign.

Bindewald E, Hayes R, Yingling YG, Kasprzak W, Shapiro BA. Bindewald E, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D392-7. doi: 10.1093/nar/gkm842. Epub 2007 Oct 18. Nucleic Acids Res. 2008. PMID: 17947325 Free PMC article.

10

Structural domains within the 3' untranslated region of Turnip crinkle virus.

McCormack JC, Yuan X, Yingling YG, Kasprzak W, Zamora RE, Shapiro BA, Simon AE. McCormack JC, et al. J Virol. 2008 Sep;82(17):8706-20. doi: 10.1128/JVI.00416-08. Epub 2008 Jun 25. J Virol. 2008. PMID: 18579599 Free PMC article.

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