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Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.
Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, Neubert H, Paulovich AG, Reiter L, Vitek O, Aebersold R, Anderson L, Bethem R, Blonder J, Boja E, Botelho J, Boyne M, Bradshaw RA, Burlingame AL, Chan D, Keshishian H, Kuhn E, Kinsinger C, Lee JS, Lee SW, Moritz R, Oses-Prieto J, Rifai N, Ritchie J, Rodriguez H, Srinivas PR, Townsend RR, Van Eyk J, Whiteley G, Wiita A, Weintraub S. Carr SA, et al. Among authors: blonder j. Mol Cell Proteomics. 2014 Mar;13(3):907-17. doi: 10.1074/mcp.M113.036095. Epub 2014 Jan 17. Mol Cell Proteomics. 2014. PMID: 24443746 Free PMC article.
Targeted Mass Spectrometry Enables Quantification of Novel Pharmacodynamic Biomarkers of ATM Kinase Inhibition.
Whiteaker JR, Wang T, Zhao L, Schoenherr RM, Kennedy JJ, Voytovich U, Ivey RG, Huang D, Lin C, Colantonio S, Caceres TW, Roberts RR, Knotts JG, Kaczmarczyk JA, Blonder J, Reading JJ, Richardson CW, Hewitt SM, Garcia-Buntley SS, Bocik W, Hiltke T, Rodriguez H, Harrington EA, Barrett JC, Lombardi B, Marco-Casanova P, Pierce AJ, Paulovich AG. Whiteaker JR, et al. Among authors: blonder j. Cancers (Basel). 2021 Jul 30;13(15):3843. doi: 10.3390/cancers13153843. Cancers (Basel). 2021. PMID: 34359745 Free PMC article.
Global analysis of the cortical neuron proteome.
Yu LR, Conrads TP, Uo T, Kinoshita Y, Morrison RS, Lucas DA, Chan KC, Blonder J, Issaq HJ, Veenstra TD. Yu LR, et al. Among authors: blonder j. Mol Cell Proteomics. 2004 Sep;3(9):896-907. doi: 10.1074/mcp.M400034-MCP200. Epub 2004 Jun 30. Mol Cell Proteomics. 2004. PMID: 15231876 Free article.
Molecular profiling of the human nasal epithelium: A proteomics approach.
Simões T, Charro N, Blonder J, Faria D, Couto FM, Chan KC, Waybright T, Isaaq HJ, Veenstra TD, Penque D. Simões T, et al. Among authors: blonder j. J Proteomics. 2011 Dec 10;75(1):56-69. doi: 10.1016/j.jprot.2011.05.012. Epub 2011 May 18. J Proteomics. 2011. PMID: 21621024 Free PMC article.
Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface.
Ye X, Chan KC, Waters AM, Bess M, Harned A, Wei BR, Loncarek J, Luke BT, Orsburn BC, Hollinger BD, Stephens RM, Bagni R, Martinko A, Wells JA, Nissley DV, McCormick F, Whiteley G, Blonder J. Ye X, et al. Among authors: blonder j. Oncotarget. 2016 Dec 27;7(52):86948-86971. doi: 10.18632/oncotarget.13566. Oncotarget. 2016. PMID: 27894102 Free PMC article.
18O stable isotope labeling in MS-based proteomics.
Ye X, Luke B, Andresson T, Blonder J. Ye X, et al. Among authors: blonder j. Brief Funct Genomic Proteomic. 2009 Mar;8(2):136-44. doi: 10.1093/bfgp/eln055. Epub 2009 Jan 16. Brief Funct Genomic Proteomic. 2009. PMID: 19151093 Free PMC article. Review.
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