Song CX - Search Results

1

Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.

Chen CC, Xiao S, Xie D, Cao X, Song CX, Wang T, He C, Zhong S. Chen CC, et al. Among authors: song cx. PLoS Comput Biol. 2013;9(12):e1003367. doi: 10.1371/journal.pcbi.1003367. Epub 2013 Dec 5. PLoS Comput Biol. 2013. PMID: 24339764 Free PMC article.

2

Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation.

Yu P, Xiao S, Xin X, Song CX, Huang W, McDee D, Tanaka T, Wang T, He C, Zhong S. Yu P, et al. Among authors: song cx. Genome Res. 2013 Feb;23(2):352-64. doi: 10.1101/gr.144949.112. Epub 2012 Oct 2. Genome Res. 2013. PMID: 23033340 Free PMC article.

3

Syntheses of two 5-hydroxymethyl-2'-deoxycytidine phosphoramidites with TBDMS as the 5-hydroxymethyl protecting group and their incorporation into DNA.

Dai Q, Song CX, Pan T, He C. Dai Q, et al. Among authors: song cx. J Org Chem. 2011 May 20;76(10):4182-8. doi: 10.1021/jo200566d. Epub 2011 Apr 14. J Org Chem. 2011. PMID: 21462947 Free PMC article.

4

Bioorthogonal labeling of 5-hydroxymethylcytosine in genomic DNA and diazirine-based DNA photo-cross-linking probes.

Song CX, He C. Song CX, et al. Acc Chem Res. 2011 Sep 20;44(9):709-17. doi: 10.1021/ar2000502. Epub 2011 May 3. Acc Chem Res. 2011. PMID: 21539303 Free PMC article.

5

Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells.

Szulwach KE, Li X, Li Y, Song CX, Han JW, Kim S, Namburi S, Hermetz K, Kim JJ, Rudd MK, Yoon YS, Ren B, He C, Jin P. Szulwach KE, et al. Among authors: song cx. PLoS Genet. 2011 Jun;7(6):e1002154. doi: 10.1371/journal.pgen.1002154. Epub 2011 Jun 23. PLoS Genet. 2011. PMID: 21731508 Free PMC article.

6

Balance of DNA methylation and demethylation in cancer development.

Song CX, He C. Song CX, et al. Genome Biol. 2012 Oct 23;13(10):173. doi: 10.1186/gb-2012-13-10-2012. Genome Biol. 2012. PMID: 23092522 Free PMC article.

7

Potential functional roles of DNA demethylation intermediates.

Song CX, He C. Song CX, et al. Trends Biochem Sci. 2013 Oct;38(10):480-4. doi: 10.1016/j.tibs.2013.07.003. Epub 2013 Aug 8. Trends Biochem Sci. 2013. PMID: 23932479 Free PMC article.

8

Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine.

Song CX, Clark TA, Lu XY, Kislyuk A, Dai Q, Turner SW, He C, Korlach J. Song CX, et al. Nat Methods. 2011 Nov 20;9(1):75-7. doi: 10.1038/nmeth.1779. Nat Methods. 2011. PMID: 22101853 Free PMC article.

9

The hunt for 5-hydroxymethylcytosine: the sixth base.

Song CX, He C. Song CX, et al. Epigenomics. 2011 Oct;3(5):521-3. doi: 10.2217/epi.11.74. Epigenomics. 2011. PMID: 22126239 Free PMC article. No abstract available.

10

Selective capture of 5-hydroxymethylcytosine from genomic DNA.

Li Y, Song CX, He C, Jin P. Li Y, et al. Among authors: song cx. J Vis Exp. 2012 Oct 5;(68):4441. doi: 10.3791/4441. J Vis Exp. 2012. PMID: 23070273 Free PMC article.

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