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Page 1
The UCSC Genome Browser database: 2014 update.
Karolchik D, Barber GP, Casper J, Clawson H, Cline MS, Diekhans M, Dreszer TR, Fujita PA, Guruvadoo L, Haeussler M, Harte RA, Heitner S, Hinrichs AS, Learned K, Lee BT, Li CH, Raney BJ, Rhead B, Rosenbloom KR, Sloan CA, Speir ML, Zweig AS, Haussler D, Kuhn RM, Kent WJ. Karolchik D, et al. Among authors: kent wj. Nucleic Acids Res. 2014 Jan;42(Database issue):D764-70. doi: 10.1093/nar/gkt1168. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24270787 Free PMC article.
Comparative assembly hubs: web-accessible browsers for comparative genomics.
Nguyen N, Hickey G, Raney BJ, Armstrong J, Clawson H, Zweig A, Karolchik D, Kent WJ, Haussler D, Paten B. Nguyen N, et al. Among authors: kent wj. Bioinformatics. 2014 Dec 1;30(23):3293-301. doi: 10.1093/bioinformatics/btu534. Epub 2014 Aug 18. Bioinformatics. 2014. PMID: 25138168 Free PMC article.
The UCSC Table Browser data retrieval tool.
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. Karolchik D, et al. Among authors: kent wj. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6. doi: 10.1093/nar/gkh103. Nucleic Acids Res. 2004. PMID: 14681465 Free PMC article.
The UCSC Proteome Browser.
Hsu F, Pringle TH, Kuhn RM, Karolchik D, Diekhans M, Haussler D, Kent WJ. Hsu F, et al. Among authors: kent wj. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D454-8. doi: 10.1093/nar/gki100. Nucleic Acids Res. 2005. PMID: 15608236 Free PMC article.
The UCSC Known Genes.
Hsu F, Kent WJ, Clawson H, Kuhn RM, Diekhans M, Haussler D. Hsu F, et al. Among authors: kent wj. Bioinformatics. 2006 May 1;22(9):1036-46. doi: 10.1093/bioinformatics/btl048. Epub 2006 Feb 24. Bioinformatics. 2006. PMID: 16500937
Variation resources at UC Santa Cruz.
Thomas DJ, Trumbower H, Kern AD, Rhead BL, Kuhn RM, Haussler D, Kent WJ. Thomas DJ, et al. Among authors: kent wj. Nucleic Acids Res. 2007 Jan;35(Database issue):D716-20. doi: 10.1093/nar/gkl953. Epub 2006 Dec 6. Nucleic Acids Res. 2007. PMID: 17151077 Free PMC article.
The ENCODE Project at UC Santa Cruz.
Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS; ENCODE Project Consortium; Haussler D, Kent WJ. Thomas DJ, et al. Among authors: kent wj. Nucleic Acids Res. 2007 Jan;35(Database issue):D663-7. doi: 10.1093/nar/gkl1017. Epub 2006 Dec 13. Nucleic Acids Res. 2007. PMID: 17166863 Free PMC article.
Comparative genomic analysis using the UCSC genome browser.
Karolchik D, Bejerano G, Hinrichs AS, Kuhn RM, Miller W, Rosenbloom KR, Zweig AS, Haussler D, Kent WJ. Karolchik D, et al. Among authors: kent wj. Methods Mol Biol. 2007;395:17-34. doi: 10.1007/978-1-59745-514-5_2. Methods Mol Biol. 2007. PMID: 17993665
The UCSC Genome Browser.
Karolchik D, Hinrichs AS, Kent WJ. Karolchik D, et al. Among authors: kent wj. Curr Protoc Bioinformatics. 2007 Mar;Chapter 1:Unit 1.4. doi: 10.1002/0471250953.bi0104s17. Curr Protoc Bioinformatics. 2007. PMID: 18428780
UCSC genome browser tutorial.
Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ. Zweig AS, et al. Among authors: kent wj. Genomics. 2008 Aug;92(2):75-84. doi: 10.1016/j.ygeno.2008.02.003. Epub 2008 Jun 2. Genomics. 2008. PMID: 18514479 Free article. Review.
128 results