Zhang B - Search Results

1

Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.

Halvey PJ, Wang X, Wang J, Bhat AA, Dhawan P, Li M, Zhang B, Liebler DC, Slebos RJ. Halvey PJ, et al. Among authors: zhang b. Cancer Res. 2014 Jan 1;74(1):387-97. doi: 10.1158/0008-5472.CAN-13-2488. Epub 2013 Nov 18. Cancer Res. 2014. PMID: 24247723 Free PMC article.

2

Global analysis of protein damage by the lipid electrophile 4-hydroxy-2-nonenal.

Codreanu SG, Zhang B, Sobecki SM, Billheimer DD, Liebler DC. Codreanu SG, et al. Among authors: zhang b. Mol Cell Proteomics. 2009 Apr;8(4):670-80. doi: 10.1074/mcp.M800070-MCP200. Epub 2008 Dec 2. Mol Cell Proteomics. 2009. PMID: 19054759 Free PMC article.

3

Network-assisted protein identification and data interpretation in shotgun proteomics.

Li J, Zimmerman LJ, Park BH, Tabb DL, Liebler DC, Zhang B. Li J, et al. Among authors: zhang b. Mol Syst Biol. 2009;5:303. doi: 10.1038/msb.2009.54. Epub 2009 Aug 18. Mol Syst Biol. 2009. PMID: 19690572 Free PMC article.

4

A bioinformatics workflow for variant peptide detection in shotgun proteomics.

Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B. Li J, et al. Among authors: zhang b. Mol Cell Proteomics. 2011 May;10(5):M110.006536. doi: 10.1074/mcp.M110.006536. Epub 2011 Mar 9. Mol Cell Proteomics. 2011. PMID: 21389108 Free PMC article.

5

Relating protein adduction to gene expression changes: a systems approach.

Zhang B, Shi Z, Duncan DT, Prodduturi N, Marnett LJ, Liebler DC. Zhang B, et al. Mol Biosyst. 2011 Jul;7(7):2118-27. doi: 10.1039/c1mb05014a. Epub 2011 May 19. Mol Biosyst. 2011. PMID: 21594272 Free PMC article.

6

Proteomic consequences of a single gene mutation in a colorectal cancer model.

Halvey PJ, Zhang B, Coffey RJ, Liebler DC, Slebos RJ. Halvey PJ, et al. Among authors: zhang b. J Proteome Res. 2012 Feb 3;11(2):1184-95. doi: 10.1021/pr2009109. Epub 2011 Dec 13. J Proteome Res. 2012. PMID: 22103262 Free PMC article.

7

Protein identification using customized protein sequence databases derived from RNA-Seq data.

Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Wang X, et al. Among authors: zhang b. J Proteome Res. 2012 Feb 3;11(2):1009-17. doi: 10.1021/pr200766z. Epub 2011 Dec 14. J Proteome Res. 2012. PMID: 22103967 Free PMC article.

8

Proteomic profiling of paraffin-embedded samples identifies metaplasia-specific and early-stage gastric cancer biomarkers.

Sousa JF, Ham AJ, Whitwell C, Nam KT, Lee HJ, Yang HK, Kim WH, Zhang B, Li M, LaFleur B, Liebler DC, Goldenring JR. Sousa JF, et al. Among authors: zhang b. Am J Pathol. 2012 Nov;181(5):1560-72. doi: 10.1016/j.ajpath.2012.07.027. Epub 2012 Sep 1. Am J Pathol. 2012. PMID: 22944598 Free PMC article.

9

Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation.

Liu Q, Halvey PJ, Shyr Y, Slebos RJ, Liebler DC, Zhang B. Liu Q, et al. Among authors: zhang b. Mol Cell Proteomics. 2013 Jul;12(7):1900-11. doi: 10.1074/mcp.M112.025783. Epub 2013 Apr 2. Mol Cell Proteomics. 2013. PMID: 23550052 Free PMC article.

10

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.

Wang J, Duncan D, Shi Z, Zhang B. Wang J, et al. Among authors: zhang b. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W77-83. doi: 10.1093/nar/gkt439. Epub 2013 May 23. Nucleic Acids Res. 2013. PMID: 23703215 Free PMC article.

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