Kohlbacher O - Search Results

1

Automated label-free quantification of metabolites from liquid chromatography-mass spectrometry data.

Kenar E, Franken H, Forcisi S, Wörmann K, Häring HU, Lehmann R, Schmitt-Kopplin P, Zell A, Kohlbacher O. Kenar E, et al. Among authors: kohlbacher o. Mol Cell Proteomics. 2014 Jan;13(1):348-59. doi: 10.1074/mcp.M113.031278. Epub 2013 Oct 31. Mol Cell Proteomics. 2014. PMID: 24176773 Free PMC article.

2

Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics.

Pfeifer N, Leinenbach A, Huber CG, Kohlbacher O. Pfeifer N, et al. Among authors: kohlbacher o. BMC Bioinformatics. 2007 Nov 30;8:468. doi: 10.1186/1471-2105-8-468. BMC Bioinformatics. 2007. PMID: 18053132 Free PMC article.

3

OpenMS - an open-source software framework for mass spectrometry.

Sturm M, Bertsch A, Gröpl C, Hildebrandt A, Hussong R, Lange E, Pfeifer N, Schulz-Trieglaff O, Zerck A, Reinert K, Kohlbacher O. Sturm M, et al. Among authors: kohlbacher o. BMC Bioinformatics. 2008 Mar 26;9:163. doi: 10.1186/1471-2105-9-163. BMC Bioinformatics. 2008. PMID: 18366760 Free PMC article.

4

LC-MSsim--a simulation software for liquid chromatography mass spectrometry data.

Schulz-Trieglaff O, Pfeifer N, Gröpl C, Kohlbacher O, Reinert K. Schulz-Trieglaff O, et al. Among authors: kohlbacher o. BMC Bioinformatics. 2008 Oct 8;9:423. doi: 10.1186/1471-2105-9-423. BMC Bioinformatics. 2008. PMID: 18842122 Free PMC article.

5

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies.

Dräger A, Kronfeld M, Ziller MJ, Supper J, Planatscher H, Magnus JB, Oldiges M, Kohlbacher O, Zell A. Dräger A, et al. Among authors: kohlbacher o. BMC Syst Biol. 2009 Jan 14;3:5. doi: 10.1186/1752-0509-3-5. BMC Syst Biol. 2009. PMID: 19144170 Free PMC article.

6

TOPPView: an open-source viewer for mass spectrometry data.

Sturm M, Kohlbacher O. Sturm M, et al. Among authors: kohlbacher o. J Proteome Res. 2009 Jul;8(7):3760-3. doi: 10.1021/pr900171m. J Proteome Res. 2009. PMID: 19425593

7

OpenMS and TOPP: open source software for LC-MS data analysis.

Reinert K, Kohlbacher O. Reinert K, et al. Among authors: kohlbacher o. Methods Mol Biol. 2010;604:201-11. doi: 10.1007/978-1-60761-444-9_14. Methods Mol Biol. 2010. PMID: 20013373

8

Probabilistic consensus scoring improves tandem mass spectrometry peptide identification.

Nahnsen S, Bertsch A, Rahnenführer J, Nordheim A, Kohlbacher O. Nahnsen S, et al. Among authors: kohlbacher o. J Proteome Res. 2011 Aug 5;10(8):3332-43. doi: 10.1021/pr2002879. Epub 2011 Jun 23. J Proteome Res. 2011. PMID: 21644507

9

The mzIdentML data standard for mass spectrometry-based proteomics results.

Jones AR, Eisenacher M, Mayer G, Kohlbacher O, Siepen J, Hubbard SJ, Selley JN, Searle BC, Shofstahl J, Seymour SL, Julian R, Binz PA, Deutsch EW, Hermjakob H, Reisinger F, Griss J, Vizcaíno JA, Chambers M, Pizarro A, Creasy D. Jones AR, et al. Among authors: kohlbacher o. Mol Cell Proteomics. 2012 Jul;11(7):M111.014381. doi: 10.1074/mcp.M111.014381. Epub 2012 Feb 27. Mol Cell Proteomics. 2012. PMID: 22375074 Free PMC article.

10

TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics data.

Junker J, Bielow C, Bertsch A, Sturm M, Reinert K, Kohlbacher O. Junker J, et al. Among authors: kohlbacher o. J Proteome Res. 2012 Jul 6;11(7):3914-20. doi: 10.1021/pr300187f. Epub 2012 May 24. J Proteome Res. 2012. PMID: 22583024

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