Ovcharenko I - Search Results

1

Sequence signatures extracted from proximal promoters can be used to predict distal enhancers.

Taher L, Smith RP, Kim MJ, Ahituv N, Ovcharenko I. Taher L, et al. Among authors: ovcharenko i. Genome Biol. 2013;14(10):R117. doi: 10.1186/gb-2013-14-10-r117. Genome Biol. 2013. PMID: 24156763 Free PMC article.

2

Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model.

Smith RP, Taher L, Patwardhan RP, Kim MJ, Inoue F, Shendure J, Ovcharenko I, Ahituv N. Smith RP, et al. Among authors: ovcharenko i. Nat Genet. 2013 Sep;45(9):1021-1028. doi: 10.1038/ng.2713. Epub 2013 Jul 28. Nat Genet. 2013. PMID: 23892608 Free PMC article.

3

Genome-wide identification of conserved regulatory function in diverged sequences.

Taher L, McGaughey DM, Maragh S, Aneas I, Bessling SL, Miller W, Nobrega MA, McCallion AS, Ovcharenko I. Taher L, et al. Among authors: ovcharenko i. Genome Res. 2011 Jul;21(7):1139-49. doi: 10.1101/gr.119016.110. Epub 2011 May 31. Genome Res. 2011. PMID: 21628450 Free PMC article.

4

CLARE: Cracking the LAnguage of Regulatory Elements.

Taher L, Narlikar L, Ovcharenko I. Taher L, et al. Among authors: ovcharenko i. Bioinformatics. 2012 Feb 15;28(4):581-3. doi: 10.1093/bioinformatics/btr704. Epub 2011 Dec 22. Bioinformatics. 2012. PMID: 22199387 Free PMC article.

5

Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control.

Burzynski GM, Reed X, Taher L, Stine ZE, Matsui T, Ovcharenko I, McCallion AS. Burzynski GM, et al. Among authors: ovcharenko i. Genome Res. 2012 Nov;22(11):2278-89. doi: 10.1101/gr.139717.112. Epub 2012 Jul 3. Genome Res. 2012. PMID: 22759862 Free PMC article.

6

A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis.

Busser BW, Taher L, Kim Y, Tansey T, Bloom MJ, Ovcharenko I, Michelson AM. Busser BW, et al. Among authors: ovcharenko i. PLoS Genet. 2012;8(3):e1002531. doi: 10.1371/journal.pgen.1002531. Epub 2012 Mar 8. PLoS Genet. 2012. PMID: 22412381 Free PMC article.

7

Identification and computational analysis of gene regulatory elements.

Taher L, Narlikar L, Ovcharenko I. Taher L, et al. Among authors: ovcharenko i. Cold Spring Harb Protoc. 2015 Jan 5;2015(1):pdb.top083642. doi: 10.1101/pdb.top083642. Cold Spring Harb Protoc. 2015. PMID: 25561628 Free PMC article. Review.

8

A high-resolution enhancer atlas of the developing telencephalon.

Visel A, Taher L, Girgis H, May D, Golonzhka O, Hoch RV, McKinsey GL, Pattabiraman K, Silberberg SN, Blow MJ, Hansen DV, Nord AS, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, Kaplan T, Kriegstein AR, Rubin EM, Ovcharenko I, Pennacchio LA, Rubenstein JL. Visel A, et al. Among authors: ovcharenko i. Cell. 2013 Feb 14;152(4):895-908. doi: 10.1016/j.cell.2012.12.041. Epub 2013 Jan 31. Cell. 2013. PMID: 23375746 Free PMC article.

9

Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.

Taher L, Ovcharenko I. Taher L, et al. Among authors: ovcharenko i. Bioinformatics. 2009 Mar 1;25(5):578-84. doi: 10.1093/bioinformatics/btp043. Epub 2009 Jan 25. Bioinformatics. 2009. PMID: 19168912 Free PMC article.

10

Global gene expression analysis of murine limb development.

Taher L, Collette NM, Murugesh D, Maxwell E, Ovcharenko I, Loots GG. Taher L, et al. Among authors: ovcharenko i. PLoS One. 2011;6(12):e28358. doi: 10.1371/journal.pone.0028358. Epub 2011 Dec 9. PLoS One. 2011. PMID: 22174793 Free PMC article.

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