Ahrné E - Search Results

1

Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics.

Schmutz C, Ahrné E, Kasper CA, Tschon T, Sorg I, Dreier RF, Schmidt A, Arrieumerlou C. Schmutz C, et al. Among authors: ahrne e. Mol Cell Proteomics. 2013 Oct;12(10):2952-68. doi: 10.1074/mcp.M113.029918. Epub 2013 Jul 4. Mol Cell Proteomics. 2013. PMID: 23828894 Free PMC article.

2

Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion.

Glatter T, Ludwig C, Ahrné E, Aebersold R, Heck AJ, Schmidt A. Glatter T, et al. Among authors: ahrne e. J Proteome Res. 2012 Nov 2;11(11):5145-56. doi: 10.1021/pr300273g. Epub 2012 Oct 16. J Proteome Res. 2012. PMID: 23017020

3

Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas.

Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R. Gunaratne J, et al. Among authors: ahrne e. Mol Cell Proteomics. 2013 Jun;12(6):1741-51. doi: 10.1074/mcp.M112.023754. Epub 2013 Mar 5. Mol Cell Proteomics. 2013. PMID: 23462206 Free PMC article.

4

Critical assessment of proteome-wide label-free absolute abundance estimation strategies.

Ahrné E, Molzahn L, Glatter T, Schmidt A. Ahrné E, et al. Proteomics. 2013 Sep;13(17):2567-78. doi: 10.1002/pmic.201300135. Epub 2013 Jul 30. Proteomics. 2013. PMID: 23794183

5

Evaluation of data-dependent and -independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites.

Bauer M, Ahrné E, Baron AP, Glatter T, Fava LL, Santamaria A, Nigg EA, Schmidt A. Bauer M, et al. Among authors: ahrne e. J Proteome Res. 2014 Dec 5;13(12):5973-88. doi: 10.1021/pr500860c. Epub 2014 Nov 13. J Proteome Res. 2014. PMID: 25330945

6

Capture compound mass spectrometry--a powerful tool to identify novel c-di-GMP effector proteins.

Laventie BJ, Nesper J, Ahrné E, Glatter T, Schmidt A, Jenal U. Laventie BJ, et al. Among authors: ahrne e. J Vis Exp. 2015 Mar 29;(97):51404. doi: 10.3791/51404. J Vis Exp. 2015. PMID: 25867682 Free PMC article.

7

Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry.

Ahrné E, Martinez-Segura A, Syed AP, Vina-Vilaseca A, Gruber AJ, Marguerat S, Schmidt A. Ahrné E, et al. Methods. 2015 Sep 1;85:100-107. doi: 10.1016/j.ymeth.2015.04.032. Epub 2015 May 4. Methods. 2015. PMID: 25952948 Free article.

8

Quantitative isoform-profiling of highly diversified recognition molecules.

Schreiner D, Simicevic J, Ahrné E, Schmidt A, Scheiffele P. Schreiner D, et al. Among authors: ahrne e. Elife. 2015 May 18;4:e07794. doi: 10.7554/eLife.07794. Elife. 2015. PMID: 25985086 Free PMC article.

9

Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells.

Glatter T, Ahrné E, Schmidt A. Glatter T, et al. Among authors: ahrne e. J Proteome Res. 2015 Nov 6;14(11):4472-85. doi: 10.1021/acs.jproteome.5b00654. Epub 2015 Oct 9. J Proteome Res. 2015. PMID: 26412744

10

Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites.

Bauer M, Ahrné E, Baron AP, Glatter T, Fava LL, Santamaria A, Nigg EA, Schmidt A. Bauer M, et al. Among authors: ahrne e. Data Brief. 2015 Sep 4;5:297-304. doi: 10.1016/j.dib.2015.08.015. eCollection 2015 Dec. Data Brief. 2015. PMID: 26550600 Free PMC article.

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