Shi Q - Search Results

1

mirTools 2.0 for non-coding RNA discovery, profiling, and functional annotation based on high-throughput sequencing.

Wu J, Liu Q, Wang X, Zheng J, Wang T, You M, Sheng Sun Z, Shi Q. Wu J, et al. Among authors: shi q. RNA Biol. 2013 Jul;10(7):1087-92. doi: 10.4161/rna.25193. Epub 2013 May 29. RNA Biol. 2013. PMID: 23778453 Free PMC article.

2

CPSS: a computational platform for the analysis of small RNA deep sequencing data.

Zhang Y, Xu B, Yang Y, Ban R, Zhang H, Jiang X, Cooke HJ, Xue Y, Shi Q. Zhang Y, et al. Among authors: shi q. Bioinformatics. 2012 Jul 15;28(14):1925-7. doi: 10.1093/bioinformatics/bts282. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576177

3

MicroRNA and piRNA profiles in normal human testis detected by next generation sequencing.

Yang Q, Hua J, Wang L, Xu B, Zhang H, Ye N, Zhang Z, Yu D, Cooke HJ, Zhang Y, Shi Q. Yang Q, et al. Among authors: shi q. PLoS One. 2013 Jun 24;8(6):e66809. doi: 10.1371/journal.pone.0066809. Print 2013. PLoS One. 2013. PMID: 23826142 Free PMC article.

4

DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data.

Zhang Y, Yu Z, Ban R, Zhang H, Iqbal F, Zhao A, Li A, Shi Q. Zhang Y, et al. Among authors: shi q. Nucleic Acids Res. 2015 Jul 1;43(W1):W289-94. doi: 10.1093/nar/gkv556. Epub 2015 May 26. Nucleic Acids Res. 2015. PMID: 26013811 Free PMC article.

5

IsomiR Bank: a research resource for tracking IsomiRs.

Zhang Y, Zang Q, Xu B, Zheng W, Ban R, Zhang H, Yang Y, Hao Q, Iqbal F, Li A, Shi Q. Zhang Y, et al. Among authors: shi q. Bioinformatics. 2016 Jul 1;32(13):2069-71. doi: 10.1093/bioinformatics/btw070. Epub 2016 Mar 2. Bioinformatics. 2016. PMID: 27153728

6

DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data.

Zhang Y, Zang Q, Zhang H, Ban R, Yang Y, Iqbal F, Li A, Shi Q. Zhang Y, et al. Among authors: shi q. Nucleic Acids Res. 2016 Jul 8;44(W1):W166-75. doi: 10.1093/nar/gkw427. Epub 2016 May 13. Nucleic Acids Res. 2016. PMID: 27179030 Free PMC article.

7

CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data.

Wan C, Gao J, Zhang H, Jiang X, Zang Q, Ban R, Zhang Y, Shi Q. Wan C, et al. Among authors: shi q. Bioinformatics. 2017 Oct 15;33(20):3289-3291. doi: 10.1093/bioinformatics/btx066. Bioinformatics. 2017. PMID: 28177064 Free PMC article.

8

Prediction of novel pre-microRNAs with high accuracy through boosting and SVM.

Zhang Y, Yang Y, Zhang H, Jiang X, Xu B, Xue Y, Cao Y, Zhai Q, Zhai Y, Xu M, Cooke HJ, Shi Q. Zhang Y, et al. Among authors: shi q. Bioinformatics. 2011 May 15;27(10):1436-7. doi: 10.1093/bioinformatics/btr148. Epub 2011 Mar 23. Bioinformatics. 2011. PMID: 21436129

9

SpermatogenesisOnline 1.0: a resource for spermatogenesis based on manual literature curation and genome-wide data mining.

Zhang Y, Zhong L, Xu B, Yang Y, Ban R, Zhu J, Cooke HJ, Hao Q, Shi Q. Zhang Y, et al. Among authors: shi q. Nucleic Acids Res. 2013 Jan;41(Database issue):D1055-62. doi: 10.1093/nar/gks1186. Epub 2012 Nov 28. Nucleic Acids Res. 2013. PMID: 23193286 Free PMC article.

10

Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data.

Gao J, Wan C, Zhang H, Li A, Zang Q, Ban R, Ali A, Yu Z, Shi Q, Jiang X, Zhang Y. Gao J, et al. Among authors: shi q. BMC Bioinformatics. 2017 Oct 3;18(1):436. doi: 10.1186/s12859-017-1833-3. BMC Bioinformatics. 2017. PMID: 28974218 Free PMC article.

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