Konieczka J - Search Results

1

Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules.

Roy S, Wapinski I, Pfiffner J, French C, Socha A, Konieczka J, Habib N, Kellis M, Thompson D, Regev A. Roy S, et al. Among authors: konieczka j. Genome Res. 2013 Jun;23(6):1039-50. doi: 10.1101/gr.146233.112. Epub 2013 May 2. Genome Res. 2013. PMID: 23640720 Free PMC article.

2

Evolutionary principles of modular gene regulation in yeasts.

Thompson DA, Roy S, Chan M, Styczynsky MP, Pfiffner J, French C, Socha A, Thielke A, Napolitano S, Muller P, Kellis M, Konieczka JH, Wapinski I, Regev A. Thompson DA, et al. Among authors: konieczka jh. Elife. 2013 Jun 18;2:e00603. doi: 10.7554/eLife.00603. Elife. 2013. PMID: 23795289 Free PMC article.

3

Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies.

Koch C, Konieczka J, Delorey T, Lyons A, Socha A, Davis K, Knaack SA, Thompson D, O'Shea EK, Regev A, Roy S. Koch C, et al. Among authors: konieczka j. Cell Syst. 2017 May 24;4(5):543-558.e8. doi: 10.1016/j.cels.2017.04.010. Cell Syst. 2017. PMID: 28544882 Free PMC article.

4

Correction: Evolutionary principles of modular gene regulation in yeasts.

Thompson DA, Roy S, Chan M, Styczynski MP, Pfiffner J, French C, Socha A, Thielke A, Napolitano S, Muller P, Kellis M, Konieczka JH, Wapinski I, Regev A. Thompson DA, et al. Among authors: konieczka jh. Elife. 2013 Jul 2;2:e01114. doi: 10.7554/eLife.01114. Elife. 2013. PMID: 23840936 Free PMC article.

5

Convergent Evolution of Calcineurin Pathway Roles in Thermotolerance and Virulence in Candida glabrata.

Chen YL, Konieczka JH, Springer DJ, Bowen SE, Zhang J, Silao FG, Bungay AA, Bigol UG, Nicolas MG, Abraham SN, Thompson DA, Regev A, Heitman J. Chen YL, et al. Among authors: konieczka jh. G3 (Bethesda). 2012 Jun;2(6):675-91. doi: 10.1534/g3.112.002279. Epub 2012 Jun 1. G3 (Bethesda). 2012. PMID: 22690377 Free PMC article.

6

BioNetBuilder2.0: bringing systems biology to chicken and other model organisms.

Konieczka JH, Drew K, Pine A, Belasco K, Davey S, Yatskievych TA, Bonneau R, Antin PB. Konieczka JH, et al. BMC Genomics. 2009 Jul 14;10 Suppl 2(Suppl 2):S6. doi: 10.1186/1471-2164-10-S2-S6. BMC Genomics. 2009. PMID: 19607657 Free PMC article.

7

Genomic resources for chicken.

Antin PB, Konieczka JH. Antin PB, et al. Dev Dyn. 2005 Apr;232(4):877-82. doi: 10.1002/dvdy.20339. Dev Dyn. 2005. PMID: 15739221 Free article. Review.

8

MicroRNA expression during chick embryo development.

Darnell DK, Kaur S, Stanislaw S, Konieczka JH, Yatskievych TA, Antin PB. Darnell DK, et al. Dev Dyn. 2006 Nov;235(11):3156-65. doi: 10.1002/dvdy.20956. Dev Dyn. 2006. PMID: 17013880 Free article.

9

Arsenic exposure perturbs epithelial-mesenchymal cell transition and gene expression in a collagen gel assay.

Lencinas A, Broka DM, Konieczka JH, Klewer SE, Antin PB, Camenisch TD, Runyan RB. Lencinas A, et al. Toxicol Sci. 2010 Jul;116(1):273-85. doi: 10.1093/toxsci/kfq086. Epub 2010 Mar 22. Toxicol Sci. 2010. PMID: 20308225 Free PMC article.

10

Secondary structure switching in Cro protein evolution.

Newlove T, Konieczka JH, Cordes MH. Newlove T, et al. Among authors: konieczka jh. Structure. 2004 Apr;12(4):569-81. doi: 10.1016/j.str.2004.02.024. Structure. 2004. PMID: 15062080 Free article.

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