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Protein Ontology: a controlled structured network of protein entities.
Natale DA, Arighi CN, Blake JA, Bult CJ, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Helfer O, Huang H, Masci AM, Ren J, Roberts NV, Ross K, Ruttenberg A, Shamovsky V, Smith B, Yerramalla MS, Zhang J, AlJanahi A, Çelen I, Gan C, Lv M, Schuster-Lezell E, Wu CH. Natale DA, et al. Among authors: ren j. Nucleic Acids Res. 2014 Jan;42(Database issue):D415-21. doi: 10.1093/nar/gkt1173. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24270789 Free PMC article.
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Natale DA, Arighi CN, Blake JA, Bona J, Chen C, Chen SC, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Duncan WD, Huang H, Ren J, Ross K, Ruttenberg A, Shamovsky V, Smith B, Wang Q, Zhang J, El-Sayed A, Wu CH. Natale DA, et al. Among authors: ren j. Nucleic Acids Res. 2017 Jan 4;45(D1):D339-D346. doi: 10.1093/nar/gkw1075. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899649 Free PMC article.
iPTMnet: Integrative Bioinformatics for Studying PTM Networks.
Ross KE, Huang H, Ren J, Arighi CN, Li G, Tudor CO, Lv M, Lee JY, Chen SC, Vijay-Shanker K, Wu CH. Ross KE, et al. Among authors: ren j. Methods Mol Biol. 2017;1558:333-353. doi: 10.1007/978-1-4939-6783-4_16. Methods Mol Biol. 2017. PMID: 28150246 Free PMC article.
WebGIVI: a web-based gene enrichment analysis and visualization tool.
Sun L, Zhu Y, Mahmood ASMA, Tudor CO, Ren J, Vijay-Shanker K, Chen J, Schmidt CJ. Sun L, et al. Among authors: ren j. BMC Bioinformatics. 2017 May 4;18(1):237. doi: 10.1186/s12859-017-1664-2. BMC Bioinformatics. 2017. PMID: 28472919 Free PMC article.
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