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The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.
Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, Gonzalez-Galarza FF, Fan J, Bessant C, Deutsch EW, Reisinger F, Vizcaíno JA, Medina-Aunon JA, Albar JP, Kohlbacher O, Jones AR. Walzer M, et al. Among authors: jones ar. Mol Cell Proteomics. 2013 Aug;12(8):2332-40. doi: 10.1074/mcp.O113.028506. Epub 2013 Apr 18. Mol Cell Proteomics. 2013. PMID: 23599424 Free PMC article.
Capture and analysis of quantitative proteomic data.
Lau KW, Jones AR, Swainston N, Siepen JA, Hubbard SJ. Lau KW, et al. Among authors: jones ar. Proteomics. 2007 Aug;7(16):2787-99. doi: 10.1002/pmic.200700127. Proteomics. 2007. PMID: 17640002 Free PMC article. Review.
The minimum information about a proteomics experiment (MIAPE).
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H. Taylor CF, et al. Among authors: jones ar. Nat Biotechnol. 2007 Aug;25(8):887-93. doi: 10.1038/nbt1329. Nat Biotechnol. 2007. PMID: 17687369 Review.
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France.
Orchard S, Montechi-Palazzi L, Deutsch EW, Binz PA, Jones AR, Paton N, Pizarro A, Creasy DM, Wojcik J, Hermjakob H. Orchard S, et al. Among authors: jones ar. Proteomics. 2007 Oct;7(19):3436-40. doi: 10.1002/pmic.200700658. Proteomics. 2007. PMID: 17907277
Modeling and managing experimental data using FuGE.
Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW. Jones AR, et al. OMICS. 2009 Jun;13(3):239-51. doi: 10.1089/omi.2008.0080. OMICS. 2009. PMID: 19441879
Annual spring meeting of the Proteomics Standards Initiative.
Orchard S, Deutsch EW, Binz PA, Jones AR, Creasy D, Montechi-Palazzi L, Corthals G, Hermjakob H. Orchard S, et al. Among authors: jones ar. Proteomics. 2009 Oct;9(19):4429-32. doi: 10.1002/pmic.200900407. Proteomics. 2009. PMID: 19670378
699 results