Ma'ayan A - Search Results

1

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.

Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Chen EY, et al. BMC Bioinformatics. 2013 Apr 15;14:128. doi: 10.1186/1471-2105-14-128. BMC Bioinformatics. 2013. PMID: 23586463 Free PMC article.

2

AVIS: AJAX viewer of interactive signaling networks.

Berger SI, Iyengar R, Ma'ayan A. Berger SI, et al. Bioinformatics. 2007 Oct 15;23(20):2803-5. doi: 10.1093/bioinformatics/btm444. Epub 2007 Sep 12. Bioinformatics. 2007. PMID: 17855420 Free PMC article.

3

Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases.

Berger SI, Posner JM, Ma'ayan A. Berger SI, et al. BMC Bioinformatics. 2007 Oct 4;8:372. doi: 10.1186/1471-2105-8-372. BMC Bioinformatics. 2007. PMID: 17916244 Free PMC article.

4

SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.

Ma'ayan A, Jenkins SL, Webb RL, Berger SI, Purushothaman SP, Abul-Husn NS, Posner JM, Flores T, Iyengar R. Ma'ayan A, et al. BMC Syst Biol. 2009 Jan 20;3:10. doi: 10.1186/1752-0509-3-10. BMC Syst Biol. 2009. PMID: 19154595 Free PMC article.

5

KEA: kinase enrichment analysis.

Lachmann A, Ma'ayan A. Lachmann A, et al. Bioinformatics. 2009 Mar 1;25(5):684-6. doi: 10.1093/bioinformatics/btp026. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176546 Free PMC article.

6

GATE: software for the analysis and visualization of high-dimensional time series expression data.

MacArthur BD, Lachmann A, Lemischka IR, Ma'ayan A. MacArthur BD, et al. Bioinformatics. 2010 Jan 1;26(1):143-4. doi: 10.1093/bioinformatics/btp628. Epub 2009 Nov 5. Bioinformatics. 2010. PMID: 19892805 Free PMC article.

7

Lists2Networks: integrated analysis of gene/protein lists.

Lachmann A, Ma'ayan A. Lachmann A, et al. BMC Bioinformatics. 2010 Feb 12;11:87. doi: 10.1186/1471-2105-11-87. BMC Bioinformatics. 2010. PMID: 20152038 Free PMC article.

8

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments.

Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. Lachmann A, et al. Bioinformatics. 2010 Oct 1;26(19):2438-44. doi: 10.1093/bioinformatics/btq466. Epub 2010 Aug 13. Bioinformatics. 2010. PMID: 20709693 Free PMC article.

9

FNV: light-weight flash-based network and pathway viewer.

Dannenfelser R, Lachmann A, Szenk M, Ma'ayan A. Dannenfelser R, et al. Bioinformatics. 2011 Apr 15;27(8):1181-2. doi: 10.1093/bioinformatics/btr098. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349871 Free PMC article.

10

Introduction to statistical methods to analyze large data sets: principal components analysis.

Clark NR, Ma'ayan A. Clark NR, et al. Sci Signal. 2011 Sep 6;4(190):tr3. doi: 10.1126/scisignal.2001967. Sci Signal. 2011. PMID: 21917717 Free PMC article. Review.

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