Baran-Gale J - Search Results

1

Complexity of microRNA function and the role of isomiRs in lipid homeostasis.

Vickers KC, Sethupathy P, Baran-Gale J, Remaley AT. Vickers KC, et al. J Lipid Res. 2013 May;54(5):1182-91. doi: 10.1194/jlr.R034801. Epub 2013 Mar 15. J Lipid Res. 2013. PMID: 23505317 Free PMC article. Review.

2

miRquant 2.0: an Expanded Tool for Accurate Annotation and Quantification of MicroRNAs and their isomiRs from Small RNA-Sequencing Data.

Kanke M, Baran-Gale J, Villanueva J, Sethupathy P. Kanke M, et al. Among authors: baran gale j. J Integr Bioinform. 2016 Dec 22;13(5):307. doi: 10.2390/biecoll-jib-2016-307. J Integr Bioinform. 2016. PMID: 28187421

3

Beta cell 5'-shifted isomiRs are candidate regulatory hubs in type 2 diabetes.

Baran-Gale J, Fannin EE, Kurtz CL, Sethupathy P. Baran-Gale J, et al. PLoS One. 2013 Sep 9;8(9):e73240. doi: 10.1371/journal.pone.0073240. eCollection 2013. PLoS One. 2013. PMID: 24039891 Free PMC article.

4

An integrative transcriptomics approach identifies miR-503 as a candidate master regulator of the estrogen response in MCF-7 breast cancer cells.

Baran-Gale J, Purvis JE, Sethupathy P. Baran-Gale J, et al. RNA. 2016 Oct;22(10):1592-603. doi: 10.1261/rna.056895.116. Epub 2016 Aug 18. RNA. 2016. PMID: 27539783 Free PMC article.

5

Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential.

Welch JD, Baran-Gale J, Perou CM, Sethupathy P, Prins JF. Welch JD, et al. Among authors: baran gale j. BMC Genomics. 2015 Feb 22;16(1):113. doi: 10.1186/s12864-015-1227-8. BMC Genomics. 2015. PMID: 25765044 Free PMC article.

6

Identification of microRNAs associated with allergic airway disease using a genetically diverse mouse population.

Rutledge H, Baran-Gale J, de Villena FP, Chesler EJ, Churchill GA, Sethupathy P, Kelada SN. Rutledge H, et al. Among authors: baran gale j. BMC Genomics. 2015 Aug 25;16(1):633. doi: 10.1186/s12864-015-1732-9. BMC Genomics. 2015. PMID: 26303911 Free PMC article.

7

Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods.

Baran-Gale J, Kurtz CL, Erdos MR, Sison C, Young A, Fannin EE, Chines PS, Sethupathy P. Baran-Gale J, et al. Front Genet. 2015 Dec 22;6:352. doi: 10.3389/fgene.2015.00352. eCollection 2015. Front Genet. 2015. PMID: 26734062 Free PMC article.

8

Small tRNA-derived RNAs are increased and more abundant than microRNAs in chronic hepatitis B and C.

Selitsky SR, Baran-Gale J, Honda M, Yamane D, Masaki T, Fannin EE, Guerra B, Shirasaki T, Shimakami T, Kaneko S, Lanford RE, Lemon SM, Sethupathy P. Selitsky SR, et al. Sci Rep. 2015 Jan 8;5:7675. doi: 10.1038/srep07675. Sci Rep. 2015. PMID: 25567797 Free PMC article.

9

Essential Function of Dicer in Resolving DNA Damage in the Rapidly Dividing Cells of the Developing and Malignant Cerebellum.

Swahari V, Nakamura A, Baran-Gale J, Garcia I, Crowther AJ, Sons R, Gershon TR, Hammond S, Sethupathy P, Deshmukh M. Swahari V, et al. Among authors: baran gale j. Cell Rep. 2016 Jan 12;14(2):216-24. doi: 10.1016/j.celrep.2015.12.037. Epub 2015 Dec 31. Cell Rep. 2016. PMID: 26748703 Free PMC article.

10

Experimental design for single-cell RNA sequencing.

Baran-Gale J, Chandra T, Kirschner K. Baran-Gale J, et al. Brief Funct Genomics. 2018 Jul 1;17(4):233-239. doi: 10.1093/bfgp/elx035. Brief Funct Genomics. 2018. PMID: 29126257 Free PMC article. Review.

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