Cordomí A - Search Results

1

The role of Cysteine 6.47 in class A GPCRs.

Olivella M, Caltabiano G, Cordomí A. Olivella M, et al. Among authors: cordomi a. BMC Struct Biol. 2013 Mar 15;13:3. doi: 10.1186/1472-6807-13-3. BMC Struct Biol. 2013. PMID: 23497259 Free PMC article.

2

Impact of helix irregularities on sequence alignment and homology modeling of G protein-coupled receptors.

Gonzalez A, Cordomí A, Caltabiano G, Pardo L. Gonzalez A, et al. Among authors: cordomi a. Chembiochem. 2012 Jul 9;13(10):1393-9. doi: 10.1002/cbic.201200189. Chembiochem. 2012. PMID: 22761034 Review.

3

The role of hydrophobic amino acids in the structure and function of the rhodopsin family of G protein-coupled receptors.

Caltabiano G, Gonzalez A, Cordomí A, Campillo M, Pardo L. Caltabiano G, et al. Among authors: cordomi a. Methods Enzymol. 2013;520:99-115. doi: 10.1016/B978-0-12-391861-1.00005-8. Methods Enzymol. 2013. PMID: 23332697

4

TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins.

Perea M, Lugtenburg I, Mayol E, Cordomí A, Deupí X, Pardo L, Olivella M. Perea M, et al. Among authors: cordomi a. BMC Bioinformatics. 2015 Aug 20;16(1):266. doi: 10.1186/s12859-015-0699-5. BMC Bioinformatics. 2015. PMID: 26289158 Free PMC article.

5

Membrane Protein Simulations Using AMBER Force Field and Berger Lipid Parameters.

Cordomí A, Caltabiano G, Pardo L. Cordomí A, et al. J Chem Theory Comput. 2012 Mar 13;8(3):948-58. doi: 10.1021/ct200491c. Epub 2012 Feb 21. J Chem Theory Comput. 2012. PMID: 26593357

6

Analysis of the interactions of sulfur-containing amino acids in membrane proteins.

Gómez-Tamayo JC, Cordomí A, Olivella M, Mayol E, Fourmy D, Pardo L. Gómez-Tamayo JC, et al. Among authors: cordomi a. Protein Sci. 2016 Aug;25(8):1517-24. doi: 10.1002/pro.2955. Epub 2016 Jun 8. Protein Sci. 2016. PMID: 27240306 Free PMC article.

7

Cross-communication between G_i and G_s in a G-protein-coupled receptor heterotetramer guided by a receptor C-terminal domain.

Navarro G, Cordomí A, Brugarolas M, Moreno E, Aguinaga D, Pérez-Benito L, Ferre S, Cortés A, Casadó V, Mallol J, Canela EI, Lluís C, Pardo L, McCormick PJ, Franco R. Navarro G, et al. Among authors: cordomi a. BMC Biol. 2018 Feb 28;16(1):24. doi: 10.1186/s12915-018-0491-x. BMC Biol. 2018. PMID: 29486745 Free PMC article.

8

Ligand-Triggered Structural Changes in the M₂ Muscarinic Acetylcholine Receptor.

Jiménez-Rosés M, Matsoukas MT, Caltabiano G, Cordomí A. Jiménez-Rosés M, et al. Among authors: cordomi a. J Chem Inf Model. 2018 May 29;58(5):1074-1082. doi: 10.1021/acs.jcim.8b00108. Epub 2018 May 2. J Chem Inf Model. 2018. PMID: 29671585

9

GPCR-SAS: A web application for statistical analyses on G protein-coupled receptors sequences.

Gómez Tamayo JC, Olivella M, Ríos S, Hoogstraat M, Gonzalez A, Mayol E, Deupi X, Campillo M, Cordomí A. Gómez Tamayo JC, et al. Among authors: cordomi a. PLoS One. 2018 Jul 25;13(7):e0199843. doi: 10.1371/journal.pone.0199843. eCollection 2018. PLoS One. 2018. PMID: 30044824 Free PMC article.

10

Inter-residue interactions in alpha-helical transmembrane proteins.

Mayol E, Campillo M, Cordomí A, Olivella M. Mayol E, et al. Among authors: cordomi a. Bioinformatics. 2019 Aug 1;35(15):2578-2584. doi: 10.1093/bioinformatics/bty978. Bioinformatics. 2019. PMID: 30566615

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