Magis AT - Search Results

1

AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures.

Earls JC, Eddy JA, Funk CC, Ko Y, Magis AT, Price ND. Earls JC, et al. Among authors: magis at. BMC Bioinformatics. 2013 Mar 5;14:78. doi: 10.1186/1471-2105-14-78. BMC Bioinformatics. 2013. PMID: 23496976 Free PMC article.

2

Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup.

Magis AT, Earls JC, Ko YH, Eddy JA, Price ND. Magis AT, et al. Bioinformatics. 2011 Mar 15;27(6):872-3. doi: 10.1093/bioinformatics/btr033. Epub 2011 Jan 20. Bioinformatics. 2011. PMID: 21257608 Free PMC article.

3

Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish.

Craig TA, Zhang Y, McNulty MS, Middha S, Ketha H, Singh RJ, Magis AT, Funk C, Price ND, Ekker SC, Kumar R. Craig TA, et al. Among authors: magis at. Mol Endocrinol. 2012 Sep;26(9):1630-42. doi: 10.1210/me.2012-1113. Epub 2012 Jun 25. Mol Endocrinol. 2012. PMID: 22734042 Free PMC article.

4

The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules.

Magis AT, Price ND. Magis AT, et al. BMC Bioinformatics. 2012 Sep 11;13:227. doi: 10.1186/1471-2105-13-227. BMC Bioinformatics. 2012. PMID: 22966958 Free PMC article.

5

Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures.

Sung J, Kim PJ, Ma S, Funk CC, Magis AT, Wang Y, Hood L, Geman D, Price ND. Sung J, et al. Among authors: magis at. PLoS Comput Biol. 2013;9(7):e1003148. doi: 10.1371/journal.pcbi.1003148. Epub 2013 Jul 25. PLoS Comput Biol. 2013. PMID: 23935471 Free PMC article.

6

Detection of 1α,25-dihydroxyvitamin D-regulated miRNAs in zebrafish by whole transcriptome sequencing.

Craig TA, Zhang Y, Magis AT, Funk CC, Price ND, Ekker SC, Kumar R. Craig TA, et al. Among authors: magis at. Zebrafish. 2014 Jun;11(3):207-18. doi: 10.1089/zeb.2013.0899. Epub 2014 Mar 20. Zebrafish. 2014. PMID: 24650217 Free PMC article.

7

Measuring the effect of inter-study variability on estimating prediction error.

Ma S, Sung J, Magis AT, Wang Y, Geman D, Price ND. Ma S, et al. Among authors: magis at. PLoS One. 2014 Oct 17;9(10):e110840. doi: 10.1371/journal.pone.0110840. eCollection 2014. PLoS One. 2014. PMID: 25330348 Free PMC article.

8

A wellness study of 108 individuals using personal, dense, dynamic data clouds.

Price ND, Magis AT, Earls JC, Glusman G, Levy R, Lausted C, McDonald DT, Kusebauch U, Moss CL, Zhou Y, Qin S, Moritz RL, Brogaard K, Omenn GS, Lovejoy JC, Hood L. Price ND, et al. Among authors: magis at. Nat Biotechnol. 2017 Aug;35(8):747-756. doi: 10.1038/nbt.3870. Epub 2017 Jul 17. Nat Biotechnol. 2017. PMID: 28714965 Free PMC article.

9

Genomic, Transcriptional, and Phenotypic Analysis of the Glucose Derepressed Clostridium beijerinckii Mutant Exhibiting Acid Crash Phenotype.

Seo SO, Janssen H, Magis A, Wang Y, Lu T, Price ND, Jin YS, Blaschek HP. Seo SO, et al. Biotechnol J. 2017 Nov;12(11). doi: 10.1002/biot.201700182. Epub 2017 Oct 9. Biotechnol J. 2017. PMID: 28762642

10

SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis.

Magis AT, Funk CC, Price ND. Magis AT, et al. IEEE Life Sci Lett. 2015 Aug;1(2):22-25. doi: 10.1109/LLS.2015.2465870. Epub 2015 Aug 28. IEEE Life Sci Lett. 2015. PMID: 29270443 Free PMC article.

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