Sasidhar YU - Search Results

1

The role of loop closure propensity in the refolding of Rop protein probed by molecular dynamics simulations.

Shukla RT, Baliga C, Sasidhar YU. Shukla RT, et al. Among authors: sasidhar yu. J Mol Graph Model. 2013 Mar;40:10-21. doi: 10.1016/j.jmgm.2012.12.007. Epub 2013 Jan 4. J Mol Graph Model. 2013. PMID: 23340205

2

Molecular dynamics simulations of certain mutant peptide models from staphylococcal nuclease reveal that initial hydrophobic collapse associated with turn propensity drives β-hairpin folding.

Shukla RT, Kumar N, Sasidhar YU. Shukla RT, et al. Among authors: sasidhar yu. J Pept Sci. 2013 Aug;19(8):516-27. doi: 10.1002/psc.2530. Epub 2013 Jun 21. J Pept Sci. 2013. PMID: 23794524

3

Energetics of β-turn formation in a mutant peptide YPGDV from influenza hemagglutinin: an MD simulation study.

Shukla RT, Sasidhar YU. Shukla RT, et al. Among authors: sasidhar yu. Phys Chem Chem Phys. 2013 Nov 14;15(42):18571-83. doi: 10.1039/c3cp52166d. Phys Chem Chem Phys. 2013. PMID: 24085383

4

Conformational dynamics of a short antigenic peptide in its free and antibody bound forms gives insight into the role of β-turns in peptide immunogenicity.

Shukla RT, Sasidhar YU. Shukla RT, et al. Among authors: sasidhar yu. Proteins. 2015 Jul;83(7):1352-67. doi: 10.1002/prot.24831. Epub 2015 May 29. Proteins. 2015. PMID: 26033223

5

Conformational dynamics of Ribonuclease Sa and its S48P mutant: Implications for the stability of the mutant protein.

Gupta S, Sasidhar YU. Gupta S, et al. Among authors: sasidhar yu. J Mol Graph Model. 2019 May;88:71-80. doi: 10.1016/j.jmgm.2019.01.001. Epub 2019 Jan 7. J Mol Graph Model. 2019. PMID: 30660985

6

The role of temperature in the binding of the disordered epitope region of human thrombopoietin to antibody: A molecular dynamics simulations study.

Badaya A, Sasidhar YU. Badaya A, et al. Among authors: sasidhar yu. J Mol Graph Model. 2022 Mar;111:108098. doi: 10.1016/j.jmgm.2021.108098. Epub 2021 Nov 29. J Mol Graph Model. 2022. PMID: 34871981

7

Beta-hairpins with native-like and non-native hydrogen bonding patterns could form during the refolding of staphylococcal nuclease.

Patel S, Sista P, Balaji PV, Sasidhar YU. Patel S, et al. Among authors: sasidhar yu. J Mol Graph Model. 2006 Sep;25(1):103-15. doi: 10.1016/j.jmgm.2005.11.007. Epub 2005 Dec 28. J Mol Graph Model. 2006. PMID: 16386445

8

Inhibition of the activity of HIV-1 protease through antibody binding and mutations probed by molecular dynamics simulations.

Badaya A, Sasidhar YU. Badaya A, et al. Among authors: sasidhar yu. Sci Rep. 2020 Mar 26;10(1):5501. doi: 10.1038/s41598-020-62423-y. Sci Rep. 2020. PMID: 32218488 Free PMC article.

9

Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.

Patel S, Sasidhar YU. Patel S, et al. Among authors: sasidhar yu. J Pept Sci. 2007 Oct;13(10):679-92. doi: 10.1002/psc.907. J Pept Sci. 2007. PMID: 17787022

10

Environmental polarity induces conformational transitions in a helical peptide sequence from bacteriophage T4 lysozyme and its tandem duplicate: a molecular dynamics simulation study.

Kaur H, Sasidhar YU. Kaur H, et al. Among authors: sasidhar yu. J Mol Model. 2015 Apr;21(4):88. doi: 10.1007/s00894-015-2621-5. Epub 2015 Mar 17. J Mol Model. 2015. PMID: 25773700

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