Vaquerizas JM - Search Results

1

DNA-binding specificities of human transcription factors.

Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. Jolma A, et al. Among authors: vaquerizas jm. Cell. 2013 Jan 17;152(1-2):327-39. doi: 10.1016/j.cell.2012.12.009. Cell. 2013. PMID: 23332764 Free article.

2

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.

Jolma A, Kivioja T, Toivonen J, Cheng L, Wei G, Enge M, Taipale M, Vaquerizas JM, Yan J, Sillanpää MJ, Bonke M, Palin K, Talukder S, Hughes TR, Luscombe NM, Ukkonen E, Taipale J. Jolma A, et al. Among authors: vaquerizas jm. Genome Res. 2010 Jun;20(6):861-73. doi: 10.1101/gr.100552.109. Epub 2010 Apr 8. Genome Res. 2010. PMID: 20378718 Free PMC article.

3

A census of human transcription factors: function, expression and evolution.

Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. Vaquerizas JM, et al. Nat Rev Genet. 2009 Apr;10(4):252-63. doi: 10.1038/nrg2538. Nat Rev Genet. 2009. PMID: 19274049 Review.

4

How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome.

Vaquerizas JM, Teichmann SA, Luscombe NM. Vaquerizas JM, et al. Methods Mol Biol. 2012;786:3-19. doi: 10.1007/978-1-61779-292-2_1. Methods Mol Biol. 2012. PMID: 21938617 Review.

5

Large-scale nuclear architecture and transcriptional control.

Vaquerizas JM, Akhtar A, Luscombe NM. Vaquerizas JM, et al. Subcell Biochem. 2011;52:279-95. doi: 10.1007/978-90-481-9069-0_13. Subcell Biochem. 2011. PMID: 21557088

6

Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila.

Kind J, Vaquerizas JM, Gebhardt P, Gentzel M, Luscombe NM, Bertone P, Akhtar A. Kind J, et al. Among authors: vaquerizas jm. Cell. 2008 May 30;133(5):813-28. doi: 10.1016/j.cell.2008.04.036. Cell. 2008. PMID: 18510926 Free article.

7

The MOF chromobarrel domain controls genome-wide H4K16 acetylation and spreading of the MSL complex.

Conrad T, Cavalli FM, Holz H, Hallacli E, Kind J, Ilik I, Vaquerizas JM, Luscombe NM, Akhtar A. Conrad T, et al. Among authors: vaquerizas jm. Dev Cell. 2012 Mar 13;22(3):610-24. doi: 10.1016/j.devcel.2011.12.016. Dev Cell. 2012. PMID: 22421046 Free article.

8

The nonspecific lethal complex is a transcriptional regulator in Drosophila.

Raja SJ, Charapitsa I, Conrad T, Vaquerizas JM, Gebhardt P, Holz H, Kadlec J, Fraterman S, Luscombe NM, Akhtar A. Raja SJ, et al. Among authors: vaquerizas jm. Mol Cell. 2010 Jun 25;38(6):827-41. doi: 10.1016/j.molcel.2010.05.021. Mol Cell. 2010. PMID: 20620954 Free article.

9

Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters.

Conrad T, Cavalli FM, Vaquerizas JM, Luscombe NM, Akhtar A. Conrad T, et al. Among authors: vaquerizas jm. Science. 2012 Aug 10;337(6095):742-6. doi: 10.1126/science.1221428. Epub 2012 Jul 19. Science. 2012. PMID: 22821985

10

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets.

Reimand J, Vaquerizas JM, Todd AE, Vilo J, Luscombe NM. Reimand J, et al. Among authors: vaquerizas jm. Nucleic Acids Res. 2010 Aug;38(14):4768-77. doi: 10.1093/nar/gkq232. Epub 2010 Apr 12. Nucleic Acids Res. 2010. PMID: 20385592 Free PMC article.

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