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Pasha: a versatile R package for piling chromatin HTS data.
Fenouil R, Descostes N, Spinelli L, Koch F, Maqbool MA, Benoukraf T, Cauchy P, Innocenti C, Ferrier P, Andrau JC. Fenouil R, et al. Among authors: maqbool ma. Bioinformatics. 2016 Aug 15;32(16):2528-30. doi: 10.1093/bioinformatics/btw206. Epub 2016 Apr 22. Bioinformatics. 2016. PMID: 27153642
Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes.
Belhocine M, Simonin M, Abad Flores JD, Cieslak A, Manosalva I, Pradel L, Smith C, Mathieu EL, Charbonnier G, Martens JHA, Stunnenberg HG, Maqbool MA, Mikulasova A, Russell LJ, Rico D, Puthier D, Ferrier P, Asnafi V, Spicuglia S. Belhocine M, et al. Among authors: maqbool ma. Genome Res. 2022 Jul;32(7):1328-1342. doi: 10.1101/gr.266924.120. Epub 2021 Jun 23. Genome Res. 2022. PMID: 34162697 Free PMC article.
Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation.
Cauchy P, Maqbool MA, Zacarias-Cabeza J, Vanhille L, Koch F, Fenouil R, Gut M, Gut I, Santana MA, Griffon A, Imbert J, Moraes-Cabé C, Bories JC, Ferrier P, Spicuglia S, Andrau JC. Cauchy P, et al. Among authors: maqbool ma. Nucleic Acids Res. 2016 May 5;44(8):3567-85. doi: 10.1093/nar/gkv1475. Epub 2015 Dec 15. Nucleic Acids Res. 2016. PMID: 26673693 Free PMC article.
ARS2 is a general suppressor of pervasive transcription.
Iasillo C, Schmid M, Yahia Y, Maqbool MA, Descostes N, Karadoulama E, Bertrand E, Andrau JC, Jensen TH. Iasillo C, et al. Among authors: maqbool ma. Nucleic Acids Res. 2017 Sep 29;45(17):10229-10241. doi: 10.1093/nar/gkx647. Nucleic Acids Res. 2017. PMID: 28973446 Free PMC article.
Divergent transcription is associated with promoters of transcriptional regulators.
Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S. Lepoivre C, et al. Among authors: maqbool ma. BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914. BMC Genomics. 2013. PMID: 24365181 Free PMC article.
33 results