Pallen MJ - Search Results

1

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.

Loman NJ, Constantinidou C, Chan JZ, Halachev M, Sergeant M, Penn CW, Robinson ER, Pallen MJ. Loman NJ, et al. Among authors: pallen mj. Nat Rev Microbiol. 2012 Sep;10(9):599-606. doi: 10.1038/nrmicro2850. Epub 2012 Aug 6. Nat Rev Microbiol. 2012. PMID: 22864262 Review.

2

Twenty years of bacterial genome sequencing.

Loman NJ, Pallen MJ. Loman NJ, et al. Among authors: pallen mj. Nat Rev Microbiol. 2015 Dec;13(12):787-94. doi: 10.1038/nrmicro3565. Epub 2015 Nov 9. Nat Rev Microbiol. 2015. PMID: 26548914 Review.

3

High-throughput sequencing and clinical microbiology: progress, opportunities and challenges.

Pallen MJ, Loman NJ, Penn CW. Pallen MJ, et al. Curr Opin Microbiol. 2010 Oct;13(5):625-31. doi: 10.1016/j.mib.2010.08.003. Epub 2010 Sep 16. Curr Opin Microbiol. 2010. PMID: 20843733 Review.

4

Performance comparison of benchtop high-throughput sequencing platforms.

Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, Wain J, Pallen MJ. Loman NJ, et al. Among authors: pallen mj. Nat Biotechnol. 2012 May;30(5):434-9. doi: 10.1038/nbt.2198. Nat Biotechnol. 2012. PMID: 22522955 Free article.

5

Defining bacterial species in the genomic era: insights from the genus Acinetobacter.

Chan JZ, Halachev MR, Loman NJ, Constantinidou C, Pallen MJ. Chan JZ, et al. Among authors: pallen mj. BMC Microbiol. 2012 Dec 23;12:302. doi: 10.1186/1471-2180-12-302. BMC Microbiol. 2012. PMID: 23259572 Free PMC article.

6

Whole-genome sequence of the emerging pathogen Mycobacterium abscessus strain 47J26.

Chan J, Halachev M, Yates E, Smith G, Pallen M. Chan J, et al. J Bacteriol. 2012 Jan;194(2):549. doi: 10.1128/JB.06440-11. J Bacteriol. 2012. PMID: 22207751 Free PMC article.

7

Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing.

Quick J, Cumley N, Wearn CM, Niebel M, Constantinidou C, Thomas CM, Pallen MJ, Moiemen NS, Bamford A, Oppenheim B, Loman NJ. Quick J, et al. Among authors: pallen mj. BMJ Open. 2014 Nov 4;4(11):e006278. doi: 10.1136/bmjopen-2014-006278. BMJ Open. 2014. PMID: 25371418 Free PMC article.

8

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.

Kay GL, Sergeant MJ, Zhou Z, Chan JZ, Millard A, Quick J, Szikossy I, Pap I, Spigelman M, Loman NJ, Achtman M, Donoghue HD, Pallen MJ. Kay GL, et al. Among authors: pallen mj. Nat Commun. 2015 Apr 7;6:6717. doi: 10.1038/ncomms7717. Nat Commun. 2015. PMID: 25848958 Free PMC article.

9

Draft Genome Sequences of Six Novel Bacterial Isolates from Chicken Ceca.

Duggett NA, Kay GL, Sergeant MJ, Bedford M, Constantinidou CI, Penn CW, Millard AD, Pallen MJ. Duggett NA, et al. Among authors: pallen mj. Genome Announc. 2016 May 26;4(3):e00448-16. doi: 10.1128/genomeA.00448-16. Genome Announc. 2016. PMID: 27231374 Free PMC article.

10

CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community.

Connor TR, Loman NJ, Thompson S, Smith A, Southgate J, Poplawski R, Bull MJ, Richardson E, Ismail M, Thompson SE, Kitchen C, Guest M, Bakke M, Sheppard SK, Pallen MJ. Connor TR, et al. Among authors: pallen mj. Microb Genom. 2016 Sep 20;2(9):e000086. doi: 10.1099/mgen.0.000086. eCollection 2016 Sep. Microb Genom. 2016. PMID: 28785418 Free PMC article.

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