Shih IeM - Search Results

1

Genome-wide identification of significant aberrations in cancer genome.

Yuan X, Yu G, Hou X, Shih IeM, Clarke R, Zhang J, Hoffman EP, Wang RR, Zhang Z, Wang Y. Yuan X, et al. Among authors: shih iem. BMC Genomics. 2012 Jul 27;13:342. doi: 10.1186/1471-2164-13-342. BMC Genomics. 2012. PMID: 22839576 Free PMC article.

2

AISAIC: a software suite for accurate identification of significant aberrations in cancers.

Zhang B, Hou X, Yuan X, Shih IeM, Zhang Z, Clarke R, Wang RR, Fu Y, Madhavan S, Wang Y, Yu G. Zhang B, et al. Among authors: shih iem. Bioinformatics. 2014 Feb 1;30(3):431-3. doi: 10.1093/bioinformatics/btt693. Epub 2013 Nov 29. Bioinformatics. 2014. PMID: 24292941 Free PMC article.

3

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R. Chen L, et al. Among authors: shih iem. BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416. BMC Bioinformatics. 2008. PMID: 18837990 Free PMC article.

4

PUGSVM: a caBIG™ analytical tool for multiclass gene selection and predictive classification.

Yu G, Li H, Ha S, Shih IeM, Clarke R, Hoffman EP, Madhavan S, Xuan J, Wang Y. Yu G, et al. Among authors: shih iem. Bioinformatics. 2011 Mar 1;27(5):736-8. doi: 10.1093/bioinformatics/btq721. Epub 2010 Dec 24. Bioinformatics. 2011. PMID: 21186245 Free PMC article.

5

BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data.

Yu G, Zhang B, Bova GS, Xu J, Shih IeM, Wang Y. Yu G, et al. Among authors: shih iem. Bioinformatics. 2011 Jun 1;27(11):1473-80. doi: 10.1093/bioinformatics/btr183. Epub 2011 Apr 15. Bioinformatics. 2011. PMID: 21498400 Free PMC article.

6

Integrative network analysis to identify aberrant pathway networks in ovarian cancer.

Chen L, Xuan J, Gu J, Wang Y, Zhang Z, Wang TL, Shih IeM. Chen L, et al. Among authors: shih iem. Pac Symp Biocomput. 2012:31-42. Pac Symp Biocomput. 2012. PMID: 22174260 Free PMC article.

7

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: shih iem. BMC Syst Biol. 2014 Jul 24;8:87. doi: 10.1186/s12918-014-0087-1. BMC Syst Biol. 2014. PMID: 25055984 Free PMC article.

8

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: shih iem. Bioinformatics. 2015 Jan 15;31(2):287-9. doi: 10.1093/bioinformatics/btu632. Epub 2014 Sep 30. Bioinformatics. 2015. PMID: 25273109 Free PMC article.

9

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor.

Fu Y, Yu G, Levine DA, Wang N, Shih IeM, Zhang Z, Clarke R, Wang Y. Fu Y, et al. Among authors: shih iem. Sci Rep. 2015 Sep 9;5:13955. doi: 10.1038/srep13955. Sci Rep. 2015. PMID: 26350498 Free PMC article.

10

Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.

Youssef I, Clarke R, Shih IeM, Wang Y, Yu G. Youssef I, et al. Among authors: shih iem. Comput Biol Med. 2016 Oct 1;77:231-9. doi: 10.1016/j.compbiomed.2016.08.020. Epub 2016 Aug 31. Comput Biol Med. 2016. PMID: 27619193

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