Siegmund KD - Search Results

1

Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data.

Liu Y, Siegmund KD, Laird PW, Berman BP. Liu Y, et al. Among authors: siegmund kd. Genome Biol. 2012 Jul 11;13(7):R61. doi: 10.1186/gb-2012-13-7-r61. Genome Biol. 2012. PMID: 22784381 Free PMC article.

2

Hierarchical clustering of lung cancer cell lines using DNA methylation markers.

Virmani AK, Tsou JA, Siegmund KD, Shen LY, Long TI, Laird PW, Gazdar AF, Laird-Offringa IA. Virmani AK, et al. Among authors: siegmund kd. Cancer Epidemiol Biomarkers Prev. 2002 Mar;11(3):291-7. Cancer Epidemiol Biomarkers Prev. 2002. PMID: 11895880

3

Analysis of complex methylation data.

Siegmund KD, Laird PW. Siegmund KD, et al. Methods. 2002 Jun;27(2):170-8. doi: 10.1016/s1046-2023(02)00071-3. Methods. 2002. PMID: 12095277

4

Diet, cancer and aging in DNA mismatch repair deficient mice.

Tsao JL, Dudley S, Kwok B, Nickel AE, Laird PW, Siegmund KD, Liskay RM, Shibata D. Tsao JL, et al. Among authors: siegmund kd. Carcinogenesis. 2002 Nov;23(11):1807-10. doi: 10.1093/carcin/23.11.1807. Carcinogenesis. 2002. PMID: 12419828

5

A comparison of cluster analysis methods using DNA methylation data.

Siegmund KD, Laird PW, Laird-Offringa IA. Siegmund KD, et al. Bioinformatics. 2004 Aug 12;20(12):1896-904. doi: 10.1093/bioinformatics/bth176. Epub 2004 Mar 25. Bioinformatics. 2004. PMID: 15044245

6

Association of breast cancer DNA methylation profiles with hormone receptor status and response to tamoxifen.

Widschwendter M, Siegmund KD, Müller HM, Fiegl H, Marth C, Müller-Holzner E, Jones PA, Laird PW. Widschwendter M, et al. Among authors: siegmund kd. Cancer Res. 2004 Jun 1;64(11):3807-13. doi: 10.1158/0008-5472.CAN-03-3852. Cancer Res. 2004. PMID: 15172987

7

Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung.

Tsou JA, Shen LY, Siegmund KD, Long TI, Laird PW, Seneviratne CK, Koss MN, Pass HI, Hagen JA, Laird-Offringa IA. Tsou JA, et al. Among authors: siegmund kd. Lung Cancer. 2005 Feb;47(2):193-204. doi: 10.1016/j.lungcan.2004.08.003. Lung Cancer. 2005. PMID: 15639718

8

Modeling exposures for DNA methylation profiles.

Siegmund KD, Levine AJ, Chang J, Laird PW. Siegmund KD, et al. Cancer Epidemiol Biomarkers Prev. 2006 Mar;15(3):567-72. doi: 10.1158/1055-9965.EPI-05-0717. Cancer Epidemiol Biomarkers Prev. 2006. PMID: 16537717

9

CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer.

Weisenberger DJ, Siegmund KD, Campan M, Young J, Long TI, Faasse MA, Kang GH, Widschwendter M, Weener D, Buchanan D, Koh H, Simms L, Barker M, Leggett B, Levine J, Kim M, French AJ, Thibodeau SN, Jass J, Haile R, Laird PW. Weisenberger DJ, et al. Among authors: siegmund kd. Nat Genet. 2006 Jul;38(7):787-93. doi: 10.1038/ng1834. Epub 2006 Jun 25. Nat Genet. 2006. PMID: 16804544

10

Cluster analysis for DNA methylation profiles having a detection threshold.

Marjoram P, Chang J, Laird PW, Siegmund KD. Marjoram P, et al. Among authors: siegmund kd. BMC Bioinformatics. 2006 Jul 26;7:361. doi: 10.1186/1471-2105-7-361. BMC Bioinformatics. 2006. PMID: 16872497 Free PMC article.

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