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microRNA regulatory network inference identifies miR-34a as a novel regulator of TGF-β signaling in glioblastoma.
Genovese G, Ergun A, Shukla SA, Campos B, Hanna J, Ghosh P, Quayle SN, Rai K, Colla S, Ying H, Wu CJ, Sarkar S, Xiao Y, Zhang J, Zhang H, Kwong L, Dunn K, Wiedemeyer WR, Brennan C, Zheng H, Rimm DL, Collins JJ, Chin L. Genovese G, et al. Among authors: collins jj. Cancer Discov. 2012 Aug;2(8):736-49. doi: 10.1158/2159-8290.CD-12-0111. Epub 2012 Jun 29. Cancer Discov. 2012. PMID: 22750848 Free PMC article.
A network biology approach to prostate cancer.
Ergün A, Lawrence CA, Kohanski MA, Brennan TA, Collins JJ. Ergün A, et al. Among authors: collins jj. Mol Syst Biol. 2007;3:82. doi: 10.1038/msb4100125. Epub 2007 Feb 13. Mol Syst Biol. 2007. PMID: 17299418 Free PMC article.
MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium.
Schembri F, Sridhar S, Perdomo C, Gustafson AM, Zhang X, Ergun A, Lu J, Liu G, Zhang X, Bowers J, Vaziri C, Ott K, Sensinger K, Collins JJ, Brody JS, Getts R, Lenburg ME, Spira A. Schembri F, et al. Among authors: collins jj. Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2319-24. doi: 10.1073/pnas.0806383106. Epub 2009 Jan 23. Proc Natl Acad Sci U S A. 2009. PMID: 19168627 Free PMC article.
Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma.
Kwong LN, Costello JC, Liu H, Jiang S, Helms TL, Langsdorf AE, Jakubosky D, Genovese G, Muller FL, Jeong JH, Bender RP, Chu GC, Flaherty KT, Wargo JA, Collins JJ, Chin L. Kwong LN, et al. Among authors: collins jj. Nat Med. 2012 Oct;18(10):1503-10. doi: 10.1038/nm.2941. Epub 2012 Sep 16. Nat Med. 2012. PMID: 22983396 Free PMC article.
A systems biology pipeline identifies regulatory networks for stem cell engineering.
Kinney MA, Vo LT, Frame JM, Barragan J, Conway AJ, Li S, Wong KK, Collins JJ, Cahan P, North TE, Lauffenburger DA, Daley GQ. Kinney MA, et al. Among authors: collins jj. Nat Biotechnol. 2019 Jul;37(7):810-818. doi: 10.1038/s41587-019-0159-2. Epub 2019 Jul 1. Nat Biotechnol. 2019. PMID: 31267104 Free PMC article.
The engineering of gene regulatory networks.
Kaern M, Blake WJ, Collins JJ. Kaern M, et al. Among authors: collins jj. Annu Rev Biomed Eng. 2003;5:179-206. doi: 10.1146/annurev.bioeng.5.040202.121553. Annu Rev Biomed Eng. 2003. PMID: 14527313 Review.
Wisdom of crowds for robust gene network inference.
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium; Kellis M, Collins JJ, Stolovitzky G. Marbach D, et al. Among authors: collins jj. Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016. Nat Methods. 2012. PMID: 22796662 Free PMC article.
850 results