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Evidence for transcript networks composed of chimeric RNAs in human cells.
Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM, Howald C, Foissac S, Ucla C, Chrast J, Ribeca P, Martin D, Murray RR, Yang X, Ghamsari L, Lin C, Bell I, Dumais E, Drenkow J, Tress ML, Gelpí JL, Orozco M, Valencia A, van Berkum NL, Lajoie BR, Vidal M, Stamatoyannopoulos J, Batut P, Dobin A, Harrow J, Hubbard T, Dekker J, Frankish A, Salehi-Ashtiani K, Reymond A, Antonarakis SE, Guigó R, Gingeras TR. Djebali S, et al. Among authors: lacroix v. PLoS One. 2012;7(1):e28213. doi: 10.1371/journal.pone.0028213. Epub 2012 Jan 4. PLoS One. 2012. PMID: 22238572 Free PMC article.
SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence.
Lopez-Maestre H, Brinza L, Marchet C, Kielbassa J, Bastien S, Boutigny M, Monnin D, Filali AE, Carareto CM, Vieira C, Picard F, Kremer N, Vavre F, Sagot MF, Lacroix V. Lopez-Maestre H, et al. Among authors: lacroix v. Nucleic Acids Res. 2016 Nov 2;44(19):e148. doi: 10.1093/nar/gkw655. Epub 2016 Jul 25. Nucleic Acids Res. 2016. PMID: 27458203 Free PMC article.
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
Sacomoto GA, Kielbassa J, Chikhi R, Uricaru R, Antoniou P, Sagot MF, Peterlongo P, Lacroix V. Sacomoto GA, et al. Among authors: lacroix v. BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S5. doi: 10.1186/1471-2105-13-S6-S5. BMC Bioinformatics. 2012. PMID: 22537044 Free PMC article.
104 results