Kosakovsky Pond SL - Search Results

1

Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen.

Fisher R, van Zyl GU, Travers SA, Kosakovsky Pond SL, Engelbrech S, Murrell B, Scheffler K, Smith D. Fisher R, et al. Among authors: kosakovsky pond sl. J Virol. 2012 Jun;86(11):6231-7. doi: 10.1128/JVI.06541-11. Epub 2012 Mar 28. J Virol. 2012. PMID: 22457522 Free PMC article.

2

Codon volatility does not reflect selective pressure on the HIV-1 genome.

Pillai SK, Kosakovsky Pond SL, Woelk CH, Richman DD, Smith DM. Pillai SK, et al. Among authors: kosakovsky pond sl. Virology. 2005 Jun 5;336(2):137-43. doi: 10.1016/j.virol.2005.03.014. Virology. 2005. PMID: 15892955 Free article.

3

Mapping protease inhibitor resistance to human immunodeficiency virus type 1 sequence polymorphisms within patients.

Poon AF, Kosakovsky Pond SL, Richman DD, Frost SD. Poon AF, et al. Among authors: kosakovsky pond sl. J Virol. 2007 Dec;81(24):13598-607. doi: 10.1128/JVI.01570-07. Epub 2007 Oct 3. J Virol. 2007. PMID: 17913806 Free PMC article.

4

A public health model for the molecular surveillance of HIV transmission in San Diego, California.

Smith DM, May SJ, Tweeten S, Drumright L, Pacold ME, Kosakovsky Pond SL, Pesano RL, Lie YS, Richman DD, Frost SD, Woelk CH, Little SJ. Smith DM, et al. Among authors: kosakovsky pond sl. AIDS. 2009 Jan 14;23(2):225-32. doi: 10.1097/QAD.0b013e32831d2a81. AIDS. 2009. PMID: 19098493 Free PMC article.

5

Are all subtypes created equal? The effectiveness of antiretroviral therapy against non-subtype B HIV-1.

Kosakovsky Pond SL, Smith DM. Kosakovsky Pond SL, et al. Clin Infect Dis. 2009 May 1;48(9):1306-9. doi: 10.1086/598503. Clin Infect Dis. 2009. PMID: 19331584 Free PMC article. No abstract available.

6

The origins of sexually transmitted HIV among men who have sex with men.

Butler DM, Delport W, Kosakovsky Pond SL, Lakdawala MK, Cheng PM, Little SJ, Richman DD, Smith DM. Butler DM, et al. Among authors: kosakovsky pond sl. Sci Transl Med. 2010 Feb 10;2(18):18re1. doi: 10.1126/scitranslmed.3000447. Sci Transl Med. 2010. PMID: 20371483 Free PMC article.

7

Correcting the bias of empirical frequency parameter estimators in codon models.

Kosakovsky Pond S, Delport W, Muse SV, Scheffler K. Kosakovsky Pond S, et al. PLoS One. 2010 Jul 30;5(7):e11230. doi: 10.1371/journal.pone.0011230. PLoS One. 2010. PMID: 20689581 Free PMC article.

8

Detection of minority resistance during early HIV-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants.

Gianella S, Delport W, Pacold ME, Young JA, Choi JY, Little SJ, Richman DD, Kosakovsky Pond SL, Smith DM. Gianella S, et al. Among authors: kosakovsky pond sl. J Virol. 2011 Aug;85(16):8359-67. doi: 10.1128/JVI.02582-10. Epub 2011 Jun 1. J Virol. 2011. PMID: 21632754 Free PMC article.

9

A random effects branch-site model for detecting episodic diversifying selection.

Kosakovsky Pond SL, Murrell B, Fourment M, Frost SD, Delport W, Scheffler K. Kosakovsky Pond SL, et al. Mol Biol Evol. 2011 Nov;28(11):3033-43. doi: 10.1093/molbev/msr125. Epub 2011 Jun 13. Mol Biol Evol. 2011. PMID: 21670087 Free PMC article.

10

Associations between phylogenetic clustering and HLA profile among HIV-infected individuals in San Diego, California.

Mehta SR, Kosakovsky Pond SL, Young JA, Richman D, Little S, Smith DM. Mehta SR, et al. Among authors: kosakovsky pond sl. J Infect Dis. 2012 May 15;205(10):1529-33. doi: 10.1093/infdis/jis231. Epub 2012 Mar 23. J Infect Dis. 2012. PMID: 22448013 Free PMC article.

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