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Massively parallel functional dissection of mammalian enhancers in vivo.
Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J. Patwardhan RP, et al. Among authors: pennacchio la. Nat Biotechnol. 2012 Feb 26;30(3):265-70. doi: 10.1038/nbt.2136. Nat Biotechnol. 2012. PMID: 22371081 Free PMC article.
In vivo enhancer analysis of human conserved non-coding sequences.
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM. Pennacchio LA, et al. Nature. 2006 Nov 23;444(7118):499-502. doi: 10.1038/nature05295. Epub 2006 Nov 5. Nature. 2006. PMID: 17086198 Free article.
In vivo characterization of human APOA5 haplotypes.
Ahituv N, Akiyama J, Chapman-Helleboid A, Fruchart J, Pennacchio LA. Ahituv N, et al. Among authors: pennacchio la. Genomics. 2007 Dec;90(6):674-9. doi: 10.1016/j.ygeno.2007.08.003. Epub 2007 Oct 23. Genomics. 2007. PMID: 17936576 Free article.
The amphioxus genome and the evolution of the chordate karyotype.
Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS. Putnam NH, et al. Among authors: pennacchio la. Nature. 2008 Jun 19;453(7198):1064-71. doi: 10.1038/nature06967. Nature. 2008. PMID: 18563158
Genomic views of distant-acting enhancers.
Visel A, Rubin EM, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Nature. 2009 Sep 10;461(7261):199-205. doi: 10.1038/nature08451. Nature. 2009. PMID: 19741700 Free PMC article. Review.
Large-scale discovery of enhancers from human heart tissue.
May D, Blow MJ, Kaplan T, McCulley DJ, Jensen BC, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Afzal V, Simpson PC, Rubin EM, Black BL, Bristow J, Pennacchio LA, Visel A. May D, et al. Among authors: pennacchio la. Nat Genet. 2011 Dec 4;44(1):89-93. doi: 10.1038/ng.1006. Nat Genet. 2011. PMID: 22138689 Free PMC article.
A high-resolution enhancer atlas of the developing telencephalon.
Visel A, Taher L, Girgis H, May D, Golonzhka O, Hoch RV, McKinsey GL, Pattabiraman K, Silberberg SN, Blow MJ, Hansen DV, Nord AS, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, Kaplan T, Kriegstein AR, Rubin EM, Ovcharenko I, Pennacchio LA, Rubenstein JL. Visel A, et al. Among authors: pennacchio la. Cell. 2013 Feb 14;152(4):895-908. doi: 10.1016/j.cell.2012.12.041. Epub 2013 Jan 31. Cell. 2013. PMID: 23375746 Free PMC article.
Function-based identification of mammalian enhancers using site-specific integration.
Dickel DE, Zhu Y, Nord AS, Wylie JN, Akiyama JA, Afzal V, Plajzer-Frick I, Kirkpatrick A, Göttgens B, Bruneau BG, Visel A, Pennacchio LA. Dickel DE, et al. Among authors: pennacchio la. Nat Methods. 2014 May;11(5):566-71. doi: 10.1038/nmeth.2886. Epub 2014 Mar 23. Nat Methods. 2014. PMID: 24658141 Free PMC article.
191 results