Wasserman WW - Search Results

1

Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers.

Kwon AT, Chou AY, Arenillas DJ, Wasserman WW. Kwon AT, et al. Among authors: wasserman ww. PLoS Comput Biol. 2011 Dec;7(12):e1002256. doi: 10.1371/journal.pcbi.1002256. Epub 2011 Dec 1. PLoS Comput Biol. 2011. PMID: 22144875 Free PMC article.

2

Identification of conserved regulatory elements by comparative genome analysis.

Lenhard B, Sandelin A, Mendoza L, Engström P, Jareborg N, Wasserman WW. Lenhard B, et al. Among authors: wasserman ww. J Biol. 2003;2(2):13. doi: 10.1186/1475-4924-2-13. Epub 2003 May 22. J Biol. 2003. PMID: 12760745 Free PMC article.

3

Complete functional rescue of the ABCA1-/- mouse by human BAC transgenesis.

Coutinho JM, Singaraja RR, Kang M, Arenillas DJ, Bertram LN, Bissada N, Staels B, Fruchart JC, Fievet C, Joseph-George AM, Wasserman WW, Hayden MR. Coutinho JM, et al. Among authors: wasserman ww. J Lipid Res. 2005 Jun;46(6):1113-23. doi: 10.1194/jlr.M400506-JLR200. Epub 2005 Mar 16. J Lipid Res. 2005. PMID: 15772424 Free article.

4

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.

Ho Sui SJ, Mortimer JR, Arenillas DJ, Brumm J, Walsh CJ, Kennedy BP, Wasserman WW. Ho Sui SJ, et al. Among authors: wasserman ww. Nucleic Acids Res. 2005 Jun 2;33(10):3154-64. doi: 10.1093/nar/gki624. Print 2005. Nucleic Acids Res. 2005. PMID: 15933209 Free PMC article.

5

NovelFam3000--uncharacterized human protein domains conserved across model organisms.

Kemmer D, Podowski RM, Arenillas D, Lim J, Hodges E, Roth P, Sonnhammer EL, Höög C, Wasserman WW. Kemmer D, et al. Among authors: wasserman ww. BMC Genomics. 2006 Mar 13;7:48. doi: 10.1186/1471-2164-7-48. BMC Genomics. 2006. PMID: 16533400 Free PMC article.

6

SAGE2Splice: unmapped SAGE tags reveal novel splice junctions.

Kuo BY, Chen Y, Bohacec S, Johansson O, Wasserman WW, Simpson EM. Kuo BY, et al. Among authors: wasserman ww. PLoS Comput Biol. 2006 Apr;2(4):e34. doi: 10.1371/journal.pcbi.0020034. Epub 2006 Apr 28. PLoS Comput Biol. 2006. PMID: 16683015 Free PMC article.

7

oPOSSUM: integrated tools for analysis of regulatory motif over-representation.

Ho Sui SJ, Fulton DL, Arenillas DJ, Kwon AT, Wasserman WW. Ho Sui SJ, et al. Among authors: wasserman ww. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W245-52. doi: 10.1093/nar/gkm427. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576675 Free PMC article.

8

PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.

Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson MI, Ticoll A, Snoddy J, Wasserman WW. Portales-Casamar E, et al. Among authors: wasserman ww. Genome Biol. 2007;8(10):R207. doi: 10.1186/gb-2007-8-10-r207. Genome Biol. 2007. PMID: 17916232 Free PMC article.

9

In silico detection of sequence variations modifying transcriptional regulation.

Andersen MC, Engström PG, Lithwick S, Arenillas D, Eriksson P, Lenhard B, Wasserman WW, Odeberg J. Andersen MC, et al. Among authors: wasserman ww. PLoS Comput Biol. 2008 Jan;4(1):e5. doi: 10.1371/journal.pcbi.0040005. Epub 2007 Nov 27. PLoS Comput Biol. 2008. PMID: 18208319 Free PMC article.

10

Mechanisms underlying p53 regulation of PIK3CA transcription in ovarian surface epithelium and in ovarian cancer.

Astanehe A, Arenillas D, Wasserman WW, Leung PC, Dunn SE, Davies BR, Mills GB, Auersperg N. Astanehe A, et al. Among authors: wasserman ww. J Cell Sci. 2008 Mar 1;121(Pt 5):664-74. doi: 10.1242/jcs.013029. Epub 2008 Feb 12. J Cell Sci. 2008. PMID: 18270270

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