Condon A - Search Results

1

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.

Ding J, Bashashati A, Roth A, Oloumi A, Tse K, Zeng T, Haffari G, Hirst M, Marra MA, Condon A, Aparicio S, Shah SP. Ding J, et al. Among authors: condon a. Bioinformatics. 2012 Jan 15;28(2):167-75. doi: 10.1093/bioinformatics/btr629. Epub 2011 Nov 13. Bioinformatics. 2012. PMID: 22084253 Free PMC article.

2

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types.

Ding J, McConechy MK, Horlings HM, Ha G, Chun Chan F, Funnell T, Mullaly SC, Reimand J, Bashashati A, Bader GD, Huntsman D, Aparicio S, Condon A, Shah SP. Ding J, et al. Among authors: condon a. Nat Commun. 2015 Oct 5;6:8554. doi: 10.1038/ncomms9554. Nat Commun. 2015. PMID: 26436532 Free PMC article.

3

densityCut: an efficient and versatile topological approach for automatic clustering of biological data.

Ding J, Shah S, Condon A. Ding J, et al. Among authors: condon a. Bioinformatics. 2016 Sep 1;32(17):2567-76. doi: 10.1093/bioinformatics/btw227. Epub 2016 Apr 23. Bioinformatics. 2016. PMID: 27153661 Free PMC article.

RESULTS: This article introduces densityCut, a novel density-based clustering algorithm, which is both time- and space-efficient and proceeds as follows: densityCut first roughly estimates the densities of data points from a K-nearest neighbour graph and then refine …

RESULTS: This article introduces densityCut, a novel density-based clustering algorithm, which is both time- and space-efficient and …

4

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

Ding J, Condon A, Shah SP. Ding J, et al. Among authors: condon a. Nat Commun. 2018 May 21;9(1):2002. doi: 10.1038/s41467-018-04368-5. Nat Commun. 2018. PMID: 29784946 Free PMC article.

5

Efficient parameter estimation for RNA secondary structure prediction.

Andronescu M, Condon A, Hoos HH, Mathews DH, Murphy KP. Andronescu M, et al. Among authors: condon a. Bioinformatics. 2007 Jul 1;23(13):i19-28. doi: 10.1093/bioinformatics/btm223. Bioinformatics. 2007. PMID: 17646296

6

A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.

Jabbari H, Condon A. Jabbari H, et al. Among authors: condon a. BMC Bioinformatics. 2014 May 18;15:147. doi: 10.1186/1471-2105-15-147. BMC Bioinformatics. 2014. PMID: 24884954 Free PMC article.

7

Computational RNA secondary structure design: empirical complexity and improved methods.

Aguirre-Hernández R, Hoos HH, Condon A. Aguirre-Hernández R, et al. Among authors: condon a. BMC Bioinformatics. 2007 Jan 31;8:34. doi: 10.1186/1471-2105-8-34. BMC Bioinformatics. 2007. PMID: 17266771 Free PMC article.

8

Analysis of energy-based algorithms for RNA secondary structure prediction.

Hajiaghayi M, Condon A, Hoos HH. Hajiaghayi M, et al. Among authors: condon a. BMC Bioinformatics. 2012 Feb 1;13:22. doi: 10.1186/1471-2105-13-22. BMC Bioinformatics. 2012. PMID: 22296803 Free PMC article.

9

RNA STRAND: the RNA secondary structure and statistical analysis database.

Andronescu M, Bereg V, Hoos HH, Condon A. Andronescu M, et al. Among authors: condon a. BMC Bioinformatics. 2008 Aug 13;9:340. doi: 10.1186/1471-2105-9-340. BMC Bioinformatics. 2008. PMID: 18700982 Free PMC article.

10

Initial association of NR2E1 with bipolar disorder and identification of candidate mutations in bipolar disorder, schizophrenia, and aggression through resequencing.

Kumar RA, McGhee KA, Leach S, Bonaguro R, Maclean A, Aguirre-Hernandez R, Abrahams BS, Coccaro EF, Hodgins S, Turecki G, Condon A, Muir WJ, Brooks-Wilson AR, Blackwood DH, Simpson EM. Kumar RA, et al. Among authors: condon a. Am J Med Genet B Neuropsychiatr Genet. 2008 Sep 5;147B(6):880-9. doi: 10.1002/ajmg.b.30696. Am J Med Genet B Neuropsychiatr Genet. 2008. PMID: 18205168

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