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An automated workflow based on data independent acquisition for practical and high-throughput personalized assay development and minimal residual disease monitoring in multiple myeloma patients.
Wijnands C, Armony G, Noori S, Gloerich J, Bonifay V, Caillon H, Luider TM, Brehmer S, Pfennig L, Srikumar T, Trede D, Kruppa G, Dejoie T, van Duijn MM, van Gool AJ, Jacobs JFM, Wessels HJCT. Wijnands C, et al. Among authors: van gool aj. Clin Chem Lab Med. 2024 Jun 17;62(12):2507-2518. doi: 10.1515/cclm-2024-0306. Print 2024 Nov 26. Clin Chem Lab Med. 2024. PMID: 38872409 Free article.
N-linked glycosylation of the M-protein variable region: glycoproteogenomics reveals a new layer of personalized complexity in multiple myeloma.
Langerhorst P, Baerenfaenger M, Kulkarni P, Nadal S, Wijnands C, Post MA, Noori S, vanDuijn MM, Joosten I, Dejoie T, van Gool AJ, Gloerich J, Lefeber DJ, Wessels HJCT, Jacobs JFM. Langerhorst P, et al. Among authors: van gool aj. Clin Chem Lab Med. 2024 Feb 9;62(8):1626-1635. doi: 10.1515/cclm-2023-1189. Print 2024 Jul 26. Clin Chem Lab Med. 2024. PMID: 38332688 Free article.
A multi-omics data analysis workflow packaged as a FAIR Digital Object.
Niehues A, de Visser C, Hagenbeek FA, Kulkarni P, Pool R, Karu N, Kindt ASD, Singh G, Vermeiren RRJM, Boomsma DI, van Dongen J, 't Hoen PAC, van Gool AJ. Niehues A, et al. Among authors: van gool aj. Gigascience. 2024 Jan 2;13:giad115. doi: 10.1093/gigascience/giad115. Gigascience. 2024. PMID: 38217405 Free PMC article.
A multi-platform approach to identify a blood-based host protein signature for distinguishing between bacterial and viral infections in febrile children (PERFORM): a multi-cohort machine learning study.
Jackson HR, Zandstra J, Menikou S, Hamilton MS, McArdle AJ, Fischer R, Thorne AM, Huang H, Tanck MW, Jansen MH, De T, Agyeman PKA, Von Both U, Carrol ED, Emonts M, Eleftheriou I, Van der Flier M, Fink C, Gloerich J, De Groot R, Moll HA, Pokorn M, Pollard AJ, Schlapbach LJ, Tsolia MN, Usuf E, Wright VJ, Yeung S, Zavadska D, Zenz W, Coin LJM, Casals-Pascual C, Cunnington AJ, Martinon-Torres F, Herberg JA, de Jonge MI, Levin M, Kuijpers TW, Kaforou M; PERFORM consortium. Jackson HR, et al. Lancet Digit Health. 2023 Nov;5(11):e774-e785. doi: 10.1016/S2589-7500(23)00149-8. Lancet Digit Health. 2023. PMID: 37890901 Free article.
M-protein diagnostics in multiple myeloma patients using ultra-sensitive targeted mass spectrometry and an off-the-shelf calibrator.
Wijnands C, Langerhorst P, Noori S, Keizer-Garritsen J, Wessels HJCT, Gloerich J, Bonifay V, Caillon H, Luider TM, van Gool AJ, Dejoie T, VanDuijn MM, Jacobs JFM. Wijnands C, et al. Among authors: van gool aj. Clin Chem Lab Med. 2023 Oct 12;62(3):540-550. doi: 10.1515/cclm-2023-0781. Print 2024 Feb 26. Clin Chem Lab Med. 2023. PMID: 37823394 Free PMC article.
Raising AWaRe-ness of Antimicrobial Stewardship Challenges in Pediatric Emergency Care: Results from the PERFORM Study Assessing Consistency and Appropriateness of Antibiotic Prescribing Across Europe.
Kolberg L, Khanijau A, van der Velden FJS, Herberg J, De T, Galassini R, Cunnington AJ, Wright VJ, Shah P, Kaforou M, Wilson C, Kuijpers T, Martinón-Torres F, Rivero-Calle I, Moll H, Vermont C, Pokorn M, Kolnik M, Pollard AJ, Agyeman PKA, Schlapbach LJ, Tsolia MN, Yeung S, Zavadska D, Zenz W, Schweintzger NA, van der Flier M, de Groot R, Usuf E, Voice M, Calvo-Bado L, Mallet F, Fidler K, Levin M, Carrol ED, Emonts M, von Both U; PERFORM Consortium. Kolberg L, et al. Clin Infect Dis. 2024 Mar 20;78(3):526-534. doi: 10.1093/cid/ciad615. Clin Infect Dis. 2024. PMID: 37820031 Free PMC article.
Ten quick tips for building FAIR workflows.
de Visser C, Johansson LF, Kulkarni P, Mei H, Neerincx P, Joeri van der Velde K, Horvatovich P, van Gool AJ, Swertz MA, Hoen PAC', Niehues A. de Visser C, et al. Among authors: van gool aj. PLoS Comput Biol. 2023 Sep 28;19(9):e1011369. doi: 10.1371/journal.pcbi.1011369. eCollection 2023 Sep. PLoS Comput Biol. 2023. PMID: 37768885 Free PMC article.
External validation of a multivariable prediction model for identification of pneumonia and other serious bacterial infections in febrile immunocompromised children.
Martin AJ, van der Velden FJS, von Both U, Tsolia MN, Zenz W, Sagmeister M, Vermont C, de Vries G, Kolberg L, Lim E, Pokorn M, Zavadska D, Martinón-Torres F, Rivero-Calle I, Hagedoorn NN, Usuf E, Schlapbach L, Kuijpers TW, Pollard AJ, Yeung S, Fink C, Voice M, Carrol E, Agyeman PKA, Khanijau A, Paulus S, De T, Herberg JA, Levin M, van der Flier M, de Groot R, Nijman R, Emonts M; PERFORM consortium. Martin AJ, et al. Arch Dis Child. 2023 Dec 14;109(1):58-66. doi: 10.1136/archdischild-2023-325869. Arch Dis Child. 2023. PMID: 37640431
83 results