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InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.
Ostlund G, Schmitt T, Forslund K, Köstler T, Messina DN, Roopra S, Frings O, Sonnhammer EL. Ostlund G, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2010 Jan;38(Database issue):D196-203. doi: 10.1093/nar/gkp931. Epub 2009 Nov 5. Nucleic Acids Res. 2010. PMID: 19892828 Free PMC article.
OrthoDisease: tracking disease gene orthologs across 100 species.
Forslund K, Schreiber F, Thanintorn N, Sonnhammer EL. Forslund K, et al. Among authors: sonnhammer el. Brief Bioinform. 2011 Sep;12(5):463-73. doi: 10.1093/bib/bbr024. Epub 2011 May 12. Brief Bioinform. 2011. PMID: 21565935 Review.
Toward community standards in the quest for orthologs.
Dessimoz C, Gabaldón T, Roos DS, Sonnhammer EL, Herrero J; Quest for Orthologs Consortium. Dessimoz C, et al. Among authors: sonnhammer el. Bioinformatics. 2012 Mar 15;28(6):900-4. doi: 10.1093/bioinformatics/bts050. Epub 2012 Feb 12. Bioinformatics. 2012. PMID: 22332236 Free PMC article.
Big data and other challenges in the quest for orthologs.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.
Hieranoid: hierarchical orthology inference.
Schreiber F, Sonnhammer ELL. Schreiber F, et al. J Mol Biol. 2013 Jun 12;425(11):2072-2081. doi: 10.1016/j.jmb.2013.02.018. Epub 2013 Feb 26. J Mol Biol. 2013. PMID: 23485417
FunCoup 3.0: database of genome-wide functional coupling networks.
Schmitt T, Ogris C, Sonnhammer EL. Schmitt T, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2014 Jan;42(Database issue):D380-8. doi: 10.1093/nar/gkt984. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185702 Free PMC article.
Comparative interactomics with Funcoup 2.0.
Alexeyenko A, Schmitt T, Tjärnberg A, Guala D, Frings O, Sonnhammer EL. Alexeyenko A, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2012 Jan;40(Database issue):D821-8. doi: 10.1093/nar/gkr1062. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110034 Free PMC article.
157 results