Hiratani I - Search Results

1

Genome-scale analysis of replication timing: from bench to bioinformatics.

Ryba T, Battaglia D, Pope BD, Hiratani I, Gilbert DM. Ryba T, et al. Among authors: hiratani i. Nat Protoc. 2011 Jun;6(6):870-95. doi: 10.1038/nprot.2011.328. Epub 2011 Jun 2. Nat Protoc. 2011. PMID: 21637205 Free PMC article.

2

Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores.

Hiratani I, Leskovar A, Gilbert DM. Hiratani I, et al. Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16861-6. doi: 10.1073/pnas.0406687101. Epub 2004 Nov 19. Proc Natl Acad Sci U S A. 2004. PMID: 15557005 Free PMC article.

3

Global reorganization of replication domains during embryonic stem cell differentiation.

Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schübeler D, Gilbert DM. Hiratani I, et al. PLoS Biol. 2008 Oct 7;6(10):e245. doi: 10.1371/journal.pbio.0060245. PLoS Biol. 2008. PMID: 18842067 Free PMC article.

4

ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data.

Weddington N, Stuy A, Hiratani I, Ryba T, Yokochi T, Gilbert DM. Weddington N, et al. Among authors: hiratani i. BMC Bioinformatics. 2008 Dec 10;9:530. doi: 10.1186/1471-2105-9-530. BMC Bioinformatics. 2008. PMID: 19077204 Free PMC article.

5

Replication timing as an epigenetic mark.

Hiratani I, Gilbert DM. Hiratani I, et al. Epigenetics. 2009 Feb 16;4(2):93-7. doi: 10.4161/epi.4.2.7772. Epub 2009 Feb 1. Epigenetics. 2009. PMID: 19242104 Free PMC article. Review.

6

Replication timing and transcriptional control: beyond cause and effect--part II.

Hiratani I, Takebayashi S, Lu J, Gilbert DM. Hiratani I, et al. Curr Opin Genet Dev. 2009 Apr;19(2):142-9. doi: 10.1016/j.gde.2009.02.002. Epub 2009 Apr 1. Curr Opin Genet Dev. 2009. PMID: 19345088 Free PMC article. Review.

7

G9a selectively represses a class of late-replicating genes at the nuclear periphery.

Yokochi T, Poduch K, Ryba T, Lu J, Hiratani I, Tachibana M, Shinkai Y, Gilbert DM. Yokochi T, et al. Among authors: hiratani i. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19363-8. doi: 10.1073/pnas.0906142106. Epub 2009 Nov 4. Proc Natl Acad Sci U S A. 2009. PMID: 19889976 Free PMC article.

8

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis.

Hiratani I, Ryba T, Itoh M, Rathjen J, Kulik M, Papp B, Fussner E, Bazett-Jones DP, Plath K, Dalton S, Rathjen PD, Gilbert DM. Hiratani I, et al. Genome Res. 2010 Feb;20(2):155-69. doi: 10.1101/gr.099796.109. Epub 2009 Dec 1. Genome Res. 2010. PMID: 19952138 Free PMC article.

9

Domain-wide regulation of DNA replication timing during mammalian development.

Pope BD, Hiratani I, Gilbert DM. Pope BD, et al. Among authors: hiratani i. Chromosome Res. 2010 Jan;18(1):127-36. doi: 10.1007/s10577-009-9100-8. Chromosome Res. 2010. PMID: 20013151 Free PMC article.

10

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.

Ryba T, Hiratani I, Lu J, Itoh M, Kulik M, Zhang J, Schulz TC, Robins AJ, Dalton S, Gilbert DM. Ryba T, et al. Among authors: hiratani i. Genome Res. 2010 Jun;20(6):761-70. doi: 10.1101/gr.099655.109. Epub 2010 Apr 29. Genome Res. 2010. PMID: 20430782 Free PMC article.

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